View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18749_low_16 (Length: 323)

Name: NF18749_low_16
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18749_low_16
NF18749_low_16
[»] chr1 (1 HSPs)
chr1 (19-310)||(32096623-32096914)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 32096623 - 32096914
Alignment:
Q  19 tttcaagtactcaatagtgtcacctaatatagaagccttgtccatttttgtcacgaatggaaccaatgatcttaaaataatgaacctctcattgagtttc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32096623 tttcaagtactcaatagtgtcacctaatatagaagccttgtccatttttgtcacgaatggaaccaatgatcttaaaataatgaacctttcattgagtttc 32096722  T
Q  119 tctcttcttcgtcgctccgcgaggacatggttggcgctcagctcgtcttgcggtgttcccttgccgcgtaacttggaggaggggtcaacgcctgcatcat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  32096723 tctcttcttcgtcgctccgcgaggacatggttggcgctcagctcgtcttgcggtgttcccttgccacgtaacttggaggaggggtcaacgcctgcatcat 32096822  T
Q  219 gagtttgaggggaggtttcgtcatggtttttggtgtggaggtatgggactgtgaagaggatgtatttgaggaggcattgggaggtggtggtg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32096823 gagtttgaggggaggtttcgtcatggtttttggtgtggaggtatgggactgtgaagaggatgtatttgaggaggcattgggaggtggtggtg 32096914  T

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