View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18749_low_19 (Length: 301)
Name: NF18749_low_19
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 35244669 - 35244387
Alignment:
| Q |
1 |
catttttctctgctttccaaaccattcgatcattaggtattcgatcaaccaacggagtattaagaactacaaaagtcatatccttcaaacatagctcgta |
100 |
Q |
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||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35244669 |
catttttttctggtttccaaaccattcgatcattaggtatccgatcaaccaacggagtattaagaactacaaaagtcataaccttcaaacatagctcgta |
35244570 |
T |
|
| Q |
101 |
atatttgtcacccctctaacattcctccctcctcctcttatttctcaattttcttcttccattctatcaaaattctctttccccatctctcatatttcat |
200 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35244569 |
atatttgtcacccctctaacattcctccctccttctcttatttctcaattttcttcttccattctatc--aattctctttccccatctctcatatttcat |
35244472 |
T |
|
| Q |
201 |
attcattttccttcatcaaataaattccatctcgattattgagtcatatagaacaaaaacatgcaacaatttagggggtagatat |
285 |
Q |
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| T |
35244471 |
attcattttccctcatcaaataaattccatctcgattattgagtcatatagaacagaaacatgcaacaatttagggggtagatat |
35244387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 16158895 - 16158984
Alignment:
| Q |
135 |
ctcttatttctcaattttcttcttccattctatcaaaattctctttccccatctctcatatttcatattcattttccttcatcaaataaatt |
226 |
Q |
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| T |
16158895 |
ctcttatttctcaatttgcttcttccattctat--taattctctttacccatctctgatactttctatccatttttgttcatcaaataaatt |
16158984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 4290982 - 4290893
Alignment:
| Q |
135 |
ctcttatttctcaattttcttcttccattctatcaaaattctctttccccatctctcatatttcatattcattttccttcatcaaataaatt |
226 |
Q |
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| T |
4290982 |
ctcttatttctcaattttctttttccattctat--taattctttttacccatctctcacactttctatccatttttgatcatcaaataaatt |
4290893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 36150346 - 36150238
Alignment:
| Q |
122 |
ttcctccctcctcctcttatttctcaattttcttcttccattctatcaaaattctctttccccatctctcatatttcatattcattttccttcatcaaat |
221 |
Q |
| |
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||||| |||||| ||||||||||||||||||||||||| |||||||| |||||||||| |||||||||||| ||||| |||| |||| |||||||||| |
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| T |
36150346 |
ttccttcctccttctcttatttctcaattttcttcttcaattctatc--aattctctttatccatctctcatacttcatgttcactttcgttcatcaaat |
36150249 |
T |
|
| Q |
222 |
aaattccatct |
232 |
Q |
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||||| ||||| |
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| T |
36150248 |
aaatttcatct |
36150238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 115 - 226
Target Start/End: Complemental strand, 21224701 - 21224592
Alignment:
| Q |
115 |
tctaacattcctccctcctcctcttatttctcaattttcttcttccattctatcaaaattctctttccccatctctcatatttcatattcattttccttc |
214 |
Q |
| |
|
|||| ||||||| |||| | ||||||||||||||||||||||||||||||||| |||||| || ||||||||||| | || ||| |||||| ||| |
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| T |
21224701 |
tctatcattccttcctcattctcttatttctcaattttcttcttccattctat--taattcttgttacccatctctcacactttctatccatttttgttc |
21224604 |
T |
|
| Q |
215 |
atcaaataaatt |
226 |
Q |
| |
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|||||||||||| |
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| T |
21224603 |
atcaaataaatt |
21224592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 232
Target Start/End: Complemental strand, 36779169 - 36779070
Alignment:
| Q |
122 |
ttcctccctcctcctcttatttctcaattttcttcttccattctatcaaaattctctttccccatctctcatatttcatattcattttccttcatcaaat |
221 |
Q |
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||||| |||||| ||||||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||| |||| |||||||||| |
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| T |
36779169 |
ttccttcctccttctcttatttctcaattttcttcttc-----------aattctctttatccatctctcatacttcatgttcactttcgttcatcaaat |
36779081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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