View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18749_low_2 (Length: 577)
Name: NF18749_low_2
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 211 - 476
Target Start/End: Original strand, 27802613 - 27802877
Alignment:
| Q |
211 |
aaaaaatctttatcattggacgatgttaggactatataaataagtttttagactcaaga-taaagaaacatacttaaacatatagattattgaaattaga |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27802613 |
aaaaaatctttatcattggacgatgttaggactatataaataagtttttagactcaaaaataaagaaacatacttaaacatatagattattgaaactaga |
27802712 |
T |
|
| Q |
310 |
caaagtttttcgttatgtttgattaatcatatgttagaatattattatctcatataatacaagatagtattttaacatccaaacataaatttaaaatatt |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27802713 |
caaagtttttcgttatgtttgattaatcatatgttagaatatt---atctcatataatacaagatagtattttaacatccaaacataaatttaaaatatt |
27802809 |
T |
|
| Q |
410 |
cacttaatacctaagaatacaacttaacatc-nnnnnnnatttgtgttctcctccttaagtatttcac |
476 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27802810 |
cacttaatacctaagaatacaacttaacatcttttttttatttgtgttctcctccttaagtatttcac |
27802877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 22 - 227
Target Start/End: Original strand, 27802388 - 27802596
Alignment:
| Q |
22 |
gtacatttatagcccttttcatagcagttttttaaactttaaatgttagcttcaatctagtgtgtgactttaatgtagtcacaccgtgatatttcaaaa- |
120 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27802388 |
gtacatttatagcccttttcatagtagttttttaaactttaaatgttagcttcaatgtagtgtgtgactttaatgtagtcacaccgtgatatttcaaaaa |
27802487 |
T |
|
| Q |
121 |
--tatcaaattcacatttagctatcttgagatcttatctcctaactcaggcatatggatatatttatcatgtatgtgcgtaaatacagatacaaaaaatc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
27802488 |
aatatcaaattcacatttagctatcttgagatcttatctcctaactcaagcatatggatatatttatcatgtatgtgcgtaaatacatatacaaaaaatc |
27802587 |
T |
|
| Q |
219 |
tttatcatt |
227 |
Q |
| |
|
||||||||| |
|
|
| T |
27802588 |
tttatcatt |
27802596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 27809753 - 27810005
Alignment:
| Q |
15 |
catcaccgtacatttatagcccttttcatagcagttttttaaactttaaatgttagcttcaatctagtgtgtgactttaatgtagtcacaccgtgatatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||||||| ||| |
|
|
| T |
27809753 |
catcaccgtacatttatagcccttttcatagcagttttttaagcttcaaatgttagcttcaatctagtctgtgactttaatgtggtcacaccgtgacatt |
27809852 |
T |
|
| Q |
115 |
tcaaaatatcaaattcacatttagctatcttgagatcttatctcctaactcaggcatatggatatatttatcatgtatgtgcgtaaatacagatacaaaa |
214 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||| |||| |||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
27809853 |
tcaaaataccaaattcacatttagcaatcttgatatctcatctcccaactcaggagtatggatatatttttcatggatgtgcgtaaatacagatacaaaa |
27809952 |
T |
|
| Q |
215 |
aatctttatcattggacgatgttaggactatataaataagtttttagactcaa |
267 |
Q |
| |
|
||| || | || |||| | |||||||||||||||||||| ||||||||||||| |
|
|
| T |
27809953 |
aatattcagcaatggaagctgttaggactatataaataactttttagactcaa |
27810005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 22 - 323
Target Start/End: Original strand, 27798953 - 27799248
Alignment:
| Q |
22 |
gtacatttatagcccttttcatagcagttttttaaactttaaatgttagcttcaatctagtgtgtgactttaatgtagtcacaccgtgatatttcaaaat |
121 |
Q |
| |
|
|||||||||| ||| ||| |||||| ||||||| ||| |||||||| |||||||||| ||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
27798953 |
gtacatttattaccccttttgtagcagatttttaagcttcaaatgttaacttcaatctacgatgtacatctaatgtggtcacaccgtgatatttcaaaat |
27799052 |
T |
|
| Q |
122 |
atcaaattcacatttagctatcttgagatcttatctcctaactcaggcatatggatatatttatcatgtatgtgcgtaaatacagatacaaaaaatcttt |
221 |
Q |
| |
|
||||||||| |||||| ||| |||||||||||||||| || | |||||||||||||| |||||||| ||| |||||||| ||| |||||| || |
|
|
| T |
27799053 |
atcaaattctcatttaattattttgagatcttatctcccaaat-----atatggatatatttttcatgtatatgcataaatacaaataaaaaaaaa-ttc |
27799146 |
T |
|
| Q |
222 |
atcattggacgatgttaggactatataaataagtttttagactcaagataaagaaacatacttaaacatatagattattgaaattagacaaagtttttcg |
321 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||| ||||||| || ||||||||||||||||||||||||| |||||||||||| |||||||| || |
|
|
| T |
27799147 |
atcattggaagatgttaggactatataaataatttttttgactcaacattaagaaacatacttaaacatatagatcattgaaattagataaagttttacg |
27799246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University