View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18749_low_21 (Length: 286)
Name: NF18749_low_21
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 264
Target Start/End: Complemental strand, 43144454 - 43144207
Alignment:
| Q |
17 |
catcatccaattaatgtttgttgtatatgactccagagcgaatgtttgtttcctcaagtaattccagtatctacatgttttttaaaactaaatcatccaa |
116 |
Q |
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| T |
43144454 |
catcatccaattaatgtttgttgtatatgactccagagcgaatgtttgtttcctcaagtaattccagtatctacatgttttttaaaactaaatcatccaa |
43144355 |
T |
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| Q |
117 |
tgtgaaatgaagtgttattttcggatgagtatagtcacaaaccttccaaaattaagatcagtagcaagggggtgaggaaagagagcaagtgggggagaag |
216 |
Q |
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| T |
43144354 |
tgtgaaatgaagtgttattttcggatgagtatagtcacaaaccttccaaaattaagatcagtagcaagggggtgaggaaagagagcaagtgggggagaag |
43144255 |
T |
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| Q |
217 |
taataagtcttttatgagcccctgcaaaagacagcattatagtaattg |
264 |
Q |
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| T |
43144254 |
taataagtcttttatgagcccctgcaaaagacagcattatagtaattg |
43144207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 265
Target Start/End: Complemental strand, 43156815 - 43156566
Alignment:
| Q |
17 |
catcatccaattaatgtttgttgtatatgactccagagcgaatgtttgtttcctcaagtaattccagtatctacatgttttttaaaactaaatcatccaa |
116 |
Q |
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| T |
43156815 |
catcacccagttaatgtttgttgtatatgactccaaaacaaatgtttgtttcctcaagtaattccaatatctacacgtttta-aaaactaaatcatcaaa |
43156717 |
T |
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| Q |
117 |
tgtgaaatgaagtgttatttt-cggatgagta-tagtcacaaaccttccaaaattaagatcagtagcaagggggtgaggaaagagagcaagtgggggaga |
214 |
Q |
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| T |
43156716 |
tatgaaaggaaactttatttttcagatgattaatagtcacaaaccttccaaaattaagatcagtagcaagggggtgaggaaagacagcaactgggggaga |
43156617 |
T |
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| Q |
215 |
agtaataagtcttttatgagcccctgcaaaagacagcattatagtaattgt |
265 |
Q |
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| T |
43156616 |
agtaataagtcttttatgagcccctgcaaaagacagcattatagtaattgt |
43156566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 240
Target Start/End: Original strand, 33833317 - 33833402
Alignment:
| Q |
155 |
aaaccttccaaaattaagatcagtagcaagggggtgaggaaagagagcaagtgggggagaagtaataagtcttttatgagcccctg |
240 |
Q |
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| T |
33833317 |
aaaccttccaaaattaagatcagttgctagcgggtgaggaaagacagcgactggcggagaagaaattagctttttatgagctcctg |
33833402 |
T |
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