View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18749_low_24 (Length: 269)
Name: NF18749_low_24
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_24 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 11235952 - 11236192
Alignment:
| Q |
1 |
ccaccacca-cttccggtcacgatatctctttcgtccggccccctttaaaatccccatcacctccattgaattcctctcttcttcatctatagaagccct |
99 |
Q |
| |
|
||||||||| ||||||||||| ||| || || ||||||||| ||||||||||||||| |||| ||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
11235952 |
ccaccaccaacttccggtcaccataacttttccgtccggcctcctttaaaatccccaccaccaccattgaattcctctcttctttctctacaaaagccct |
11236051 |
T |
|
| Q |
100 |
caatttatttttagattagagaagtttaatttttgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccacc |
199 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11236052 |
caatttatttttagattgaagaagtttaatttttgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccacc |
11236151 |
T |
|
| Q |
200 |
atattcttcctcatgatgtcagcaacaaaacccctatgttt |
240 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
11236152 |
atattcttcctcgtgatgtcagcaacaaaacccctatgttt |
11236192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 23482964 - 23482725
Alignment:
| Q |
1 |
ccaccacca-cttccggtcacgatatctctttcgtccggccccctttaaaatccccatcacctccattgaattcctctcttcttcatctatagaagccct |
99 |
Q |
| |
|
||||||||| ||||| ||||| ||| || || |||| |||| ||||||||||||||| |||| ||||||||||||||||||||| |||| | ||||||| |
|
|
| T |
23482964 |
ccaccaccaacttccagtcaccataacttttccgtctggcctcctttaaaatccccaccaccaccattgaattcctctcttctttctctacaaaagccct |
23482865 |
T |
|
| Q |
100 |
caatttatttttagattagagaagtttaatttttgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccacc |
199 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23482864 |
caatttatttttagattgaagaagtttaatttttgagatctcccc-ttctctcttgttttccggccaccgtgagttgccattggaaaaaccaaacccacc |
23482766 |
T |
|
| Q |
200 |
atattcttcctcatgatgtcagcaacaaaacccctatgttt |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23482765 |
atattcttcctcatgatgtcagcaacaaaacccctatgttt |
23482725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 11 - 240
Target Start/End: Complemental strand, 34906172 - 34905943
Alignment:
| Q |
11 |
ttccggtcacgatatctctttcgtccggccccctttaaaatccccatcacctccattgaattcctctcttcttcatctatagaagccctcaatttatttt |
110 |
Q |
| |
|
|||||||||| ||| || |||||||||||| |||||||||||||| || | |||||||||||||||||||||| |||| | ||||| ||||||| |||| |
|
|
| T |
34906172 |
ttccggtcaccataactttttcgtccggcctcctttaaaatcccctccatcaccattgaattcctctcttcttcctctacaaaagccatcaatttttttt |
34906073 |
T |
|
| Q |
111 |
tagattagagaagtttaatttttgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcct |
210 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
34906072 |
tagattggagaagtttaattttcgagatctcccccttctctcttgtttttcggccaccgtgagttgccattgagaaaaccaaacccaacatattcttcct |
34905973 |
T |
|
| Q |
211 |
catgatgtcagcaacaaaacccctatgttt |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34905972 |
catgatgtcagcaacaaaacccctatgttt |
34905943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 23473456 - 23473228
Alignment:
| Q |
12 |
tccggtcacgatatctctttcgtccggccccctttaaaatccccatcacctccattgaattcctctcttcttcatctatagaagccctcaatttattttt |
111 |
Q |
| |
|
||||||||| ||| || || ||||||||| ||||||||||||| |||| || ||||||||||||||||||| |||| | ||||||||||||||||||| |
|
|
| T |
23473456 |
tccggtcaccataactattccgtccggcctcctttaaaatccctgccaccaccgttgaattcctctcttcttcctctacaaaagccctcaatttattttt |
23473357 |
T |
|
| Q |
112 |
agattagagaagtttaatttttgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcctc |
211 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
23473356 |
agattggagaagtttaatttttgagacttcccccttctctcttgttttccggccactgtgagttgccattgggaaaatcaaacccatcatattcttcctc |
23473257 |
T |
|
| Q |
212 |
atgatgtcagcaacaaaacccctatgttt |
240 |
Q |
| |
|
|||||||||||||||||||| | |||||| |
|
|
| T |
23473256 |
atgatgtcagcaacaaaacctcgatgttt |
23473228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 52610184 - 52610392
Alignment:
| Q |
32 |
cgtccggccccctttaaaatccccatcacctccattgaattcctctcttcttcatctatagaagccctcaatttatttttagattagagaagtttaattt |
131 |
Q |
| |
|
||||||||| |||||||||||||| |||| |||||||||||||||||||||| |||| | ||||||||||||||||| |||||| |||||||||||||| |
|
|
| T |
52610184 |
cgtccggcctcctttaaaatccccgccaccaccattgaattcctctcttcttcctctacaaaagccctcaatttatttatagattggagaagtttaattt |
52610283 |
T |
|
| Q |
132 |
ttgagatctcccccttctctcttgttttccggccaccgtgagttgccattgggaaaaccaaacccaccatattcttcctcatgatgtcagcaacaaaacc |
231 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52610284 |
ttgagatctcccccttctttcttgttttccggccaccgtgagttgccatttggaaaaccaaacccaccatattctttctcatgatgtcagcaacaaaacc |
52610383 |
T |
|
| Q |
232 |
cctatgttt |
240 |
Q |
| |
|
||||||||| |
|
|
| T |
52610384 |
cctatgttt |
52610392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 22627927 - 22627861
Alignment:
| Q |
64 |
cattgaattcctctcttcttcatctatagaagccctcaatttatttttagattagagaagtttaatt |
130 |
Q |
| |
|
|||| ||||||||||| ||| |||| | |||||| |||||||||| |||||| ||||||||||||| |
|
|
| T |
22627927 |
cattaaattcctctctctttcctctacaaaagcccgcaatttatttctagattggagaagtttaatt |
22627861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University