View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18749_low_29 (Length: 239)
Name: NF18749_low_29
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_29 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 42048951 - 42049172
Alignment:
| Q |
18 |
agtatagaagtcgaatcgataccttgaagatcccatggttcaattttatagagatcaacgtctttgatgacatcgagatcaatctttttagacgatacct |
117 |
Q |
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| T |
42048951 |
agtatagatgtcggatcgataccttgaagatcccatggttcaattttatagagatcaacgtctttgatgacatcgagatcaatctttttagacgatacct |
42049050 |
T |
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| Q |
118 |
tcttcctgaggtagtaatcaacaagttcttcgtcggttggatgaaaacgaaagcctggaggtacatgtgaaaatgtattcatattccacctcagaagaat |
217 |
Q |
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| T |
42049051 |
tcttcctgaggtagtaatcaacaagttcttcgtcggttggatgaaaacgaaagcctggaggtacatgtgaaaatgtattcatattccacctcagaagaat |
42049150 |
T |
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| Q |
218 |
taaaacctgtactcataaaaaa |
239 |
Q |
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| T |
42049151 |
taaaacctgtactcataaaaaa |
42049172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 36 - 203
Target Start/End: Complemental strand, 12850601 - 12850434
Alignment:
| Q |
36 |
ataccttgaagatcccatggttcaattttatagagatcaacgtctttgatgacatcgagatcaatctttttagacgataccttcttcctgaggtagtaat |
135 |
Q |
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| T |
12850601 |
ataccttcaagatcccatggttcaattttgtaaaggtcaacatcttttatgacatcaagatcaatccttcttgaagcaattttcttcctaaggtagtaat |
12850502 |
T |
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| Q |
136 |
caacaagttcttcgtcggttggatgaaaacgaaagcctggaggtacatgtgaaaatgtattcatattc |
203 |
Q |
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| T |
12850501 |
ccacaagttcttcatctgtgggatggaacctaaaacccgggggaacatgagaaaaagtattcatattc |
12850434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 37 - 187
Target Start/End: Complemental strand, 3575130 - 3574980
Alignment:
| Q |
37 |
taccttgaagatcccatggttcaattttatagagatcaacgtctttgatgacatcgagatcaatctttttagacgataccttcttcctgaggtagtaatc |
136 |
Q |
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||||||| |||||||| || ||||| |||||||||||||| ||||| |||| ||| ||||||||| ||||||| | || ||| ||||| ||||||| ||| |
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| T |
3575130 |
taccttgtagatcccacggctcaatcttatagagatcaacatctttaatgatatcaagatcaatccttttagaagctatctttttcctaaggtagtgatc |
3575031 |
T |
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| Q |
137 |
aacaagttcttcgtcggttggatgaaaacgaaagcctggaggtacatgtga |
187 |
Q |
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| T |
3575030 |
aacaagttcttcatcagtgggatggaaacgaaatccaggaggaacgtgtga |
3574980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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