View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18749_low_3 (Length: 571)
Name: NF18749_low_3
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 26833615 - 26834066
Alignment:
| Q |
1 |
acgacatgcctaggcaaagaaacactgcaactctcagcaatggcacgatcaatggctctctgatttgtctccaacgaaactcgagttgtaaaccaagtcc |
100 |
Q |
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| T |
26833615 |
acgacatgcctaggcaaacaaacactgcaactctcagcaatggcacgatcaatggctctctgatttgtctccaaagaaactcgtgttgtaaaccaagtcc |
26833714 |
T |
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| Q |
101 |
attccttgctccttgaaaagcatacannnnnnnacttcaaatgnnnnnnngaataaatttaaccaactttacttaaagaaaaggagaaaaacttgttttt |
200 |
Q |
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| T |
26833715 |
attccttgctccttgaaaagcatacatttttttacttcaaatgtttttttgaataaatttaaccaactttacttaaagaaaaggagaaaaacttgttttt |
26833814 |
T |
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| Q |
201 |
gtttccaggg-tcatgcagaaaagaaactgtggaagaggtagaaaaattaacaaaacgttgatatgcttgaagatctaagcatgttatggttccttaatg |
299 |
Q |
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| T |
26833815 |
gtttccaggggtcatgcagaaaagaaactgtgaaagaggtagaaaaattaacaaaacgttgatatgcttgaagatctaagcatgttatggttccttaatg |
26833914 |
T |
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| Q |
300 |
aaaaagaaaagagagacagaacagaacaatgacaatgcaaagcaggtaaatggttggaaaaatgaaagnnnnnnnnnnnnnnnnnnntgcttgcgggttt |
399 |
Q |
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| T |
26833915 |
aaaaagaaaagagagacagaacagaacaatgacaatgcaaagcaggtaaatggttggaaaattgaaag------gagagagagagagtgcttgcgggttt |
26834008 |
T |
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| Q |
400 |
cagtttctgtaagagctatggcactgtgattgtgagaaataagaatgctctgtttttt |
457 |
Q |
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| T |
26834009 |
cagtttctgtaagagctatggcactgtgattgtgagaaataagaatgctctgtttttt |
26834066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 482 - 539
Target Start/End: Original strand, 26834085 - 26834142
Alignment:
| Q |
482 |
attaaagcgttgtttgctttttatagtggatttagctgaactatcactgcctcataaa |
539 |
Q |
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| T |
26834085 |
attaaagcgttgtttgctttttatagtggatttagttgaactatcactgcctcataaa |
26834142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 26786828 - 26786891
Alignment:
| Q |
3 |
gacatgcctaggcaaagaaacactgcaactctcagcaatggcacgatcaatggctctctgattt |
66 |
Q |
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||||||| |||||| | |||||||||| ||||||||| |||||||||||| || ||||| |||| |
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| T |
26786828 |
gacatgcttaggcagataaacactgcagctctcagcattggcacgatcaaaggttctcttattt |
26786891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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