View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18749_low_34 (Length: 213)
Name: NF18749_low_34
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_34 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 43311044 - 43310832
Alignment:
| Q |
1 |
tgttcaacatctttacaggtgaatataagtgatttactctccacaactattaatgatatagtttgtagggttgctttgggaagaaagtatagtggtgaaa |
100 |
Q |
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| T |
43311044 |
tgttccacatctttacccgtgaatataagtgatttactctccacaactatcaatgatatagtttgtagggttgctttggggagaaagtatagtggtgaaa |
43310945 |
T |
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| Q |
101 |
gtgggaagggatttaaaaagttattattggattttactgagttacttggtacttttgttgttggtgactatgttccttggcttgattggatgaccaatgt |
200 |
Q |
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| T |
43310944 |
gtgggaagggatttaaaaagttattattggattttactgagttacttggtacttttgttgttggtgactatgttccttggcttgattggatgaccaatgt |
43310845 |
T |
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| Q |
201 |
ttctggattttat |
213 |
Q |
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| T |
43310844 |
ttctggattttat |
43310832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 43 - 189
Target Start/End: Complemental strand, 43268411 - 43268265
Alignment:
| Q |
43 |
acaactattaatgatatagtttgtagggttgctttgggaagaaagtatagtggtgaaagtgggaagggatttaaaaagttattattggattttactgagt |
142 |
Q |
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| T |
43268411 |
acaactacgaatgatatagtttgtagggttgttttgggaagaaagtatagtggtgaaaatgggaagggattttcaaagttattgatggattttactgagt |
43268312 |
T |
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| Q |
143 |
tacttggtacttttgttgttggtgactatgttccttggcttgattgg |
189 |
Q |
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| T |
43268311 |
tacttggtgcttttgttgttggggactatgttccttggcttgattgg |
43268265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 43275325 - 43275131
Alignment:
| Q |
19 |
gtgaatataagtgatttactctccacaactattaatgatatagtttgtagggttgctttgggaagaaagtatagtggtgaaagtgggaagggatttaaaa |
118 |
Q |
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| T |
43275325 |
gtgaatataagtgaattagcctccaaaattactaatgatatagtttgtagggttgctttaggaagaaaatatgatggtgaaagtggaaagggatttaaga |
43275226 |
T |
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| Q |
119 |
agttattattggattttactgagttacttggtacttttgttgttggtgactatgttccttggcttgattggatgaccaatgtttctggattttat |
213 |
Q |
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| T |
43275225 |
agttgttgagggaatttaacgagtcacttagtgcttttattgttggagcctatgttccttggcttgattgggtgacccatgtttctggattttat |
43275131 |
T |
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