View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18749_low_4 (Length: 534)
Name: NF18749_low_4
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 33942753 - 33943030
Alignment:
| Q |
1 |
gggaagtcggaggagataaggccgttccagagagagtcatcagaggaaaggcggtgaaggaggtggcaagagattgagatgcaacagagatccttgtagc |
100 |
Q |
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| T |
33942753 |
gggaagtcggaggagataaggccgttccagagagagtcatcagaggaaaggcggtgaaggaggtggcaagagattgagatgcaacagagatccttgtagc |
33942852 |
T |
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| Q |
101 |
tcaagctgcttttttcaattccgatttccagaattctgctccatagttcttcagggagagatgacattttgggtgaattcaacaaattatcctattgtct |
200 |
Q |
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| T |
33942853 |
tcaagctgcttttttcaattccgatttccagaattctgctccatagttcttcagggagagatgacattttgggtgaattcaacaaagtatcctattgtct |
33942952 |
T |
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| Q |
201 |
ttttccacaccaagttcaacgttaaattcaccaaacaatacatacatttaagacaagaaatcattttcagaatagagg |
278 |
Q |
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| T |
33942953 |
ttttccacaccaagttcaacgttaaattcaccaaacaatacatacatttaagacaagaaatcattttcagaatagagg |
33943030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 339 - 490
Target Start/End: Original strand, 33943088 - 33943239
Alignment:
| Q |
339 |
aatggatctatataatataacaatggtgcatggttccgttgatgagtcaagaaatccacacaacaattagatttgaggaaacaatgagaaaatgagaaac |
438 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33943088 |
aatggatctatataatataacaatggtgcatggttccgttgatgagtcaagaaatccacacaacaattagatttgaggaaacaatgagaaaatgagaaac |
33943187 |
T |
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| Q |
439 |
tccaaatcagtcgatagaggagatttaaaaccttttcaaagaaaggtttaag |
490 |
Q |
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| T |
33943188 |
tccaaatcagtcgatagaggagatttaaaaccttttcaaagaaaggtttaag |
33943239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 33934572 - 33934741
Alignment:
| Q |
1 |
gggaagtcggaggagataaggccgttccagagagagtcatcagaggaaaggcggtgaaggaggtggcaagagattgagatgcaacagagatccttgtagc |
100 |
Q |
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|||||||||||||||| ||||| |||||||||||| || ||| ||| ||||||||||||||| |||| |||||||||||||| ||||| || ||||||| |
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| T |
33934572 |
gggaagtcggaggagagaaggcggttccagagagaatcttcaacggagaggcggtgaaggaggcggcaggagattgagatgcagcagaggtctttgtagc |
33934671 |
T |
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| Q |
101 |
tcaagctgcttttttcaattccgatttccagaattctgctccatagttcttcagggagagatgacatttt |
170 |
Q |
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|||| | || | || ||||||||||| |||||| || |||||||||| |||||||| |||||||| |
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| T |
33934672 |
tcaaaccgcaatcttggattccgatttcgagaattttggtccatagttcgattgggagagacgacatttt |
33934741 |
T |
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