View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18749_low_5 (Length: 469)

Name: NF18749_low_5
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18749_low_5
NF18749_low_5
[»] chr5 (33 HSPs)
chr5 (67-126)||(2897951-2898010)
chr5 (66-128)||(12936255-12936317)
chr5 (66-128)||(12950410-12950472)
chr5 (66-123)||(8214305-8214362)
chr5 (64-128)||(42056404-42056468)
chr5 (66-123)||(16931270-16931327)
chr5 (67-123)||(22964670-22964726)
chr5 (67-123)||(39939964-39940020)
chr5 (68-123)||(22965764-22965819)
chr5 (69-123)||(2899087-2899141)
chr5 (76-130)||(7486616-7486670)
chr5 (66-123)||(2401740-2401797)
chr5 (66-123)||(17646625-17646682)
chr5 (16-63)||(16931085-16931132)
chr5 (66-117)||(17644741-17644792)
chr5 (16-58)||(27809586-27809628)
chr5 (16-65)||(2898148-2898197)
chr5 (66-126)||(12937458-12937518)
chr5 (33-65)||(12951482-12951514)
chr5 (17-65)||(42057383-42057431)
chr5 (69-108)||(8213485-8213524)
chr5 (76-123)||(11356362-11356409)
chr5 (67-126)||(12951622-12951681)
chr5 (14-65)||(17644929-17644980)
chr5 (76-123)||(27014669-27014716)
chr5 (76-122)||(7483698-7483744)
chr5 (16-65)||(8213635-8213684)
chr5 (76-117)||(36351287-36351328)
chr5 (68-117)||(42057555-42057604)
chr5 (80-120)||(6791649-6791689)
chr5 (33-65)||(8214182-8214214)
chr5 (33-65)||(12937319-12937351)
chr5 (75-123)||(37280451-37280499)
[»] chr7 (10 HSPs)
chr7 (66-128)||(31602927-31602989)
chr7 (76-123)||(47943255-47943302)
chr7 (76-123)||(47948685-47948732)
chr7 (77-123)||(22292797-22292843)
chr7 (76-123)||(2204021-2204068)
chr7 (69-123)||(25694061-25694115)
chr7 (76-123)||(17185156-17185203)
chr7 (77-123)||(2206301-2206347)
chr7 (81-122)||(10552700-10552741)
chr7 (80-123)||(31592326-31592370)
[»] chr3 (28 HSPs)
chr3 (66-123)||(31401126-31401183)
chr3 (68-128)||(54921400-54921460)
chr3 (71-123)||(45266527-45266579)
chr3 (66-123)||(21196589-21196646)
chr3 (67-123)||(48098146-48098202)
chr3 (64-123)||(48097344-48097403)
chr3 (69-123)||(21196420-21196474)
chr3 (66-123)||(47642777-47642834)
chr3 (66-123)||(54922570-54922627)
chr3 (76-123)||(10036829-10036876)
chr3 (76-123)||(11377185-11377232)
chr3 (76-123)||(11379775-11379822)
chr3 (76-123)||(30191668-30191715)
chr3 (76-123)||(34470244-34470291)
chr3 (85-128)||(40469257-40469300)
chr3 (76-123)||(46412473-46412520)
chr3 (33-65)||(17074548-17074580)
chr3 (76-128)||(30194518-30194570)
chr3 (76-128)||(37268100-37268152)
chr3 (77-117)||(42321728-42321768)
chr3 (33-65)||(45265637-45265669)
chr3 (33-65)||(47641162-47641194)
chr3 (33-65)||(47642638-47642670)
chr3 (76-128)||(47760928-47760980)
chr3 (33-65)||(48098005-48098037)
chr3 (76-123)||(49275382-49275430)
chr3 (33-65)||(54921572-54921604)
chr3 (33-65)||(54922431-54922463)
[»] chr6 (5 HSPs)
chr6 (68-123)||(9904642-9904697)
chr6 (64-117)||(22018431-22018484)
chr6 (67-123)||(22019633-22019689)
chr6 (24-65)||(4221833-4221874)
chr6 (16-57)||(9904512-9904553)
[»] chr4 (30 HSPs)
chr4 (67-128)||(55686263-55686324)
chr4 (67-126)||(9617209-9617268)
chr4 (66-128)||(35142838-35142900)
chr4 (68-120)||(9618418-9618470)
chr4 (76-130)||(40729231-40729285)
chr4 (68-117)||(38194560-38194609)
chr4 (16-65)||(50910390-50910439)
chr4 (66-123)||(50911406-50911463)
chr4 (68-129)||(52073504-52073565)
chr4 (66-123)||(52074661-52074718)
chr4 (76-123)||(2774990-2775037)
chr4 (76-123)||(10466543-10466590)
chr4 (69-123)||(11014303-11014357)
chr4 (69-123)||(40730593-40730647)
chr4 (16-65)||(11014497-11014546)
chr4 (16-65)||(35143848-35143897)
chr4 (66-123)||(38193367-38193424)
chr4 (76-129)||(51029607-51029660)
chr4 (76-128)||(21168415-21168467)
chr4 (76-123)||(26592854-26592901)
chr4 (68-123)||(40732454-40732509)
chr4 (76-123)||(45936609-45936656)
chr4 (76-123)||(49790620-49790667)
chr4 (16-62)||(31432784-31432830)
chr4 (81-123)||(46518349-46518391)
chr4 (81-123)||(51025992-51026034)
chr4 (67-115)||(11015546-11015594)
chr4 (33-65)||(38193547-38193579)
chr4 (33-65)||(40731447-40731479)
chr4 (76-128)||(43890405-43890457)
[»] chr2 (28 HSPs)
chr2 (66-123)||(10602215-10602272)
chr2 (64-117)||(44328539-44328592)
chr2 (66-123)||(3259875-3259932)
chr2 (68-126)||(3260223-3260281)
chr2 (69-121)||(15630453-15630505)
chr2 (79-123)||(6978811-6978855)
chr2 (67-123)||(31297643-31297699)
chr2 (76-123)||(5422306-5422353)
chr2 (67-126)||(6172107-6172166)
chr2 (68-123)||(31298839-31298894)
chr2 (66-128)||(6173073-6173135)
chr2 (77-123)||(22712218-22712264)
chr2 (68-117)||(15629284-15629333)
chr2 (66-98)||(31410-31442)
chr2 (76-128)||(23719306-23719358)
chr2 (76-128)||(24106978-24107030)
chr2 (67-123)||(44329741-44329797)
chr2 (33-65)||(44655503-44655535)
chr2 (72-119)||(17112480-17112527)
chr2 (77-128)||(27131372-27131423)
chr2 (76-130)||(17537136-17537190)
chr2 (35-65)||(31298699-31298729)
chr2 (16-65)||(6172236-6172285)
chr2 (33-65)||(10602144-10602176)
chr2 (33-65)||(15630305-15630337)
chr2 (33-65)||(34414936-34414968)
chr2 (33-65)||(36584312-36584344)
chr2 (67-123)||(36584471-36584526)
[»] scaffold0004 (2 HSPs)
scaffold0004 (68-128)||(130554-130614)
scaffold0004 (66-123)||(127207-127264)
[»] chr8 (12 HSPs)
chr8 (66-123)||(2809233-2809290)
chr8 (64-123)||(27641533-27641592)
chr8 (69-123)||(40678281-40678335)
chr8 (66-128)||(42001844-42001906)
chr8 (76-128)||(33074858-33074910)
chr8 (66-117)||(42000617-42000668)
chr8 (76-123)||(8036253-8036300)
chr8 (72-123)||(38032149-38032200)
chr8 (76-123)||(42167153-42167200)
chr8 (81-123)||(16583193-16583235)
chr8 (33-62)||(42000808-42000837)
chr8 (33-65)||(42001675-42001707)
[»] chr1 (21 HSPs)
chr1 (68-121)||(37505013-37505066)
chr1 (76-128)||(23344493-23344545)
chr1 (68-128)||(51936600-51936660)
chr1 (68-122)||(34814483-34814537)
chr1 (66-123)||(7998187-7998244)
chr1 (67-123)||(16002657-16002714)
chr1 (66-123)||(37504584-37504641)
chr1 (76-123)||(17684493-17684540)
chr1 (76-123)||(39855429-39855476)
chr1 (64-123)||(48898885-48898944)
chr1 (81-123)||(46201226-46201268)
chr1 (33-65)||(7998381-7998413)
chr1 (76-128)||(12792322-12792374)
chr1 (77-129)||(15356391-15356443)
chr1 (71-123)||(34815676-34815728)
chr1 (76-128)||(37780032-37780084)
chr1 (76-128)||(49263902-49263954)
chr1 (33-65)||(34815523-34815555)
chr1 (66-94)||(45423324-45423352)
chr1 (72-120)||(49259870-49259918)
chr1 (33-65)||(51936458-51936490)


Alignment Details
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 2898010 - 2897951
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctc 126  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2898010 ggtaatttggtcatttacttgtgtcaataggaaatattcaatgtcaaaaaagcaattctc 2897951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 12936317 - 12936255
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  12936317 gggtaatttggacatttacttgtgtcaataggaagtattcaatgtcaaaaaagcaattctcat 12936255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 12950472 - 12950410
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||    
T  12950472 gggtaatttggacatttacttgtgtcaataggaagtattcaatgtcaaaaaagcaattctcat 12950410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 8214305 - 8214362
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  8214305 gggtaatttggtcatttacttgtgtcaataggaagtattcaatgtcaaaaaagcaatt 8214362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 42056468 - 42056404
Alignment:
Q  64 gagggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||| ||||    
T  42056468 gagggtaatttagtcagttacttgtatcaatagaaaatattcaatgtcaaaaaagcaattttcat 42056404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 16931270 - 16931327
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||    
T  16931270 gggtaatttggtcatttacttatgtcaataggaaatattctatgtcaaaaaagcaatt 16931327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 22964726 - 22964670
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||    
T  22964726 ggtaatttggtcatttacttatgtcaataggaagtattcaatgtcaaaaaagcaatt 22964670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 39940020 - 39939964
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  39940020 ggtaatttggtcatttacttgtgtcaataggaagtattcaatgtcaaaaaaacaatt 39939964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 22965764 - 22965819
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||| |||||||||||||||||||| || |||||||||||||||||||||||    
T  22965764 gtaatttgatcatttacttgtgtcaataggaagtattcaatgtcaaaaaagcaatt 22965819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 2899087 - 2899141
Alignment:
Q  69 taatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||||| |||||    
T  2899087 taatttgatcatttacttgtgtcaataggaaatattcaatgtcaaaaaaacaatt 2899141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 7486616 - 7486670
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcatgt 130  Q
    |||||||||||||||||||||||| |||||| ||| |||||||||||| ||||||    
T  7486616 gtcatttacttgtgtcaatagaaagtattcattgtaaaaaaagcaattttcatgt 7486670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 2401740 - 2401797
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||| ||||||||| |  || |||||||||||||||||||||||    
T  2401740 gggtaatttggtcatttagttgtgtcaacaagaagtattcaatgtcaaaaaagcaatt 2401797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 17646625 - 17646682
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||||||||| || || ||||| |||||| ||||||||||    
T  17646625 gggtaatttggtcatttacttgtgtcaacaggaagtattctatgtcagaaaagcaatt 17646682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 16931085 - 16931132
Alignment:
Q  16 atatacatagagagtcggtaaagtttcgtagaattctgaataaatttc 63  Q
    ||||| |||||| ||| |||||||||||||||||||||||||||||||    
T  16931085 atatatatagagggtctgtaaagtttcgtagaattctgaataaatttc 16931132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 17644792 - 17644741
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaa 117  Q
    |||||||||| |||||||||||||||||||| || ||||| |||||||||||    
T  17644792 gggtaatttgatcatttacttgtgtcaataggaagtattctatgtcaaaaaa 17644741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 27809586 - 27809628
Alignment:
Q  16 atatacatagagagtcggtaaagtttcgtagaattctgaataa 58  Q
    ||||| |||||| ||||||||||||||||||||||||||||||    
T  27809586 atatatatagagggtcggtaaagtttcgtagaattctgaataa 27809628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 2898197 - 2898148
Alignment:
Q  16 atatacatagagagtcggtaaagtttcgtagaattctgaataaatttcga 65  Q
    ||||| |||||| ||| |||||||||||||||||||||||||| ||||||    
T  2898197 atatatatagagggtctgtaaagtttcgtagaattctgaataagtttcga 2898148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 126
Target Start/End: Original strand, 12937458 - 12937518
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctc 126  Q
    |||||||||  |||||||||||| ||||||  || ||||||||||||||||| ||||||||    
T  12937458 gggtaattttatcatttacttgtatcaataagaagtattcaatgtcaaaaaaacaattctc 12937518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 12951482 - 12951514
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||||||||||    
T  12951482 gtaaagtttcgtagaattctgaataaatttcga 12951514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 42057383 - 42057431
Alignment:
Q  17 tatacatagagagtcggtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||| |||||| ||| |||||||||||||||||||||||||| ||||||    
T  42057383 tatatatagagggtcagtaaagtttcgtagaattctgaataagtttcga 42057431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 8213524 - 8213485
Alignment:
Q  69 taatttggtcatttacttgtgtcaatagaaaatattcaat 108  Q
    ||||||| |||||||||||||||||||| |||||||||||    
T  8213524 taatttgatcatttacttgtgtcaataggaaatattcaat 8213485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 11356409 - 11356362
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||||| ||||  |||||| ||||||||||    
T  11356409 gtcatttacttgtgtcaatagaaagtattttatgtcagaaaagcaatt 11356362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 126
Target Start/End: Original strand, 12951622 - 12951681
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctc 126  Q
    ||||||||  |||||||||| | ||||||| || ||||||||||||||||| ||||||||    
T  12951622 ggtaattttatcatttacttatatcaataggaagtattcaatgtcaaaaaaacaattctc 12951681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Complemental strand, 17644980 - 17644929
Alignment:
Q  14 atatatacatagagagtcggtaaagtttcgtagaattctgaataaatttcga 65  Q
    ||||||| | |||| ||| |||||||||||||||||||||||||| ||||||    
T  17644980 atatatatagagagggtctgtaaagtttcgtagaattctgaataagtttcga 17644929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 27014669 - 27014716
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||| |||||| ||||| ||||||||| ||||||||||||||||    
T  27014669 gtcatttaattgtgttaataggaaatattcattgtcaaaaaagcaatt 27014716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 122
Target Start/End: Complemental strand, 7483744 - 7483698
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaat 122  Q
    ||||||||||||||||||||| || |||||| |||||||||| ||||    
T  7483744 gtcatttacttgtgtcaataggaagtattcattgtcaaaaaaacaat 7483698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 8213684 - 8213635
Alignment:
Q  16 atatacatagagagtcggtaaagtttcgtagaattctgaataaatttcga 65  Q
    ||||| |||||  ||| |||||||||||||||||||||||||| ||||||    
T  8213684 atatatatagatggtctgtaaagtttcgtagaattctgaataagtttcga 8213635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 36351287 - 36351328
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaa 117  Q
    ||||||||||||||||||||| || |||||| ||||||||||    
T  36351287 gtcatttacttgtgtcaataggaagtattcattgtcaaaaaa 36351328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 42057555 - 42057604
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaa 117  Q
    |||||||| |||||||||||| ||||||  || |||||||||||||||||    
T  42057555 gtaatttgatcatttacttgtttcaataagaagtattcaatgtcaaaaaa 42057604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 6791689 - 6791649
Alignment:
Q  80 tttacttgtgtcaatagaaaatattcaatgtcaaaaaagca 120  Q
    |||||||||||||||| ||| |||||| |||||||||||||    
T  6791689 tttacttgtgtcaatataaagtattcattgtcaaaaaagca 6791649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 8214182 - 8214214
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  8214182 gtaaagtttcgtagaattctgaataactttcga 8214214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 12937319 - 12937351
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||| ||||||||||||||||||||||    
T  12937319 gtaaagtttcatagaattctgaataaatttcga 12937351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 123
Target Start/End: Complemental strand, 37280499 - 37280451
Alignment:
Q  75 ggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||| ||  | ||||||||| ||||||||||    
T  37280499 ggtcatttacttgtgtcaataggaagaaatcaatgtcagaaaagcaatt 37280451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 31602927 - 31602989
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31602927 gggtaatttgatcatttacttgtgtcaatagaaaatattcaatatcaaaaaagcaattctcat 31602989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 47943302 - 47943255
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||    
T  47943302 gtcatttacttgtgtcaatagaaaatattcattgtcaaaaaatcaatt 47943255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 47948732 - 47948685
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||    
T  47948732 gtcatttacttgtgtcaatagaaaatattcattgtcaaaaaatcaatt 47948685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 22292797 - 22292843
Alignment:
Q  77 tcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||    
T  22292797 tcatttacttgtgtcaatagaaaatattcattgtcaaaaaagtaatt 22292843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 2204068 - 2204021
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| || |||||| ||||||||||||||||    
T  2204068 gtcatttacttgtgtcaataggaagtattcattgtcaaaaaagcaatt 2204021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 25694115 - 25694061
Alignment:
Q  69 taatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||| |||||||||| ||||||||| || ||||||||||||||||| |||||    
T  25694115 taatttgatcatttacttatgtcaatagcaagtattcaatgtcaaaaaaacaatt 25694061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 17185156 - 17185203
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| || |||||| |||| |||||||||||    
T  17185156 gtcatttacttgtgtcaataggaagtattcattgtcgaaaaagcaatt 17185203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 2206301 - 2206347
Alignment:
Q  77 tcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||| || ||||| |||||| ||||||||||    
T  2206301 tcatttacttgtgtcaataggaagtattctatgtcagaaaagcaatt 2206347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Complemental strand, 10552741 - 10552700
Alignment:
Q  81 ttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaat 122  Q
    |||||||||||||||| || ||||| ||||||||||||||||    
T  10552741 ttacttgtgtcaataggaagtattccatgtcaaaaaagcaat 10552700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 80 - 123
Target Start/End: Complemental strand, 31592370 - 31592326
Alignment:
Q  80 tttacttgtgtcaatagaaaa-tattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||    
T  31592370 tttacttgtgtcaatagaaaatttttctatgtcaaaaaagcaatt 31592326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 31401126 - 31401183
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  31401126 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaggcaatt 31401183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 54921460 - 54921400
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  54921460 gtaatttggtcatttacttgtgtcaatagaaagtattcactgtcaaaaaagcaattctcat 54921400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 45266527 - 45266579
Alignment:
Q  71 atttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45266527 atttggtcatttacttgtgtcaataggaaatattcaatgtcaaaaaagcaatt 45266579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 21196589 - 21196646
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||    
T  21196589 gggtaatttggtcatttacttgtgtcaataggaagtattctatgtcaaaaaagcaatt 21196646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 48098146 - 48098202
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||||||||||| || ||||| |||||| ||||||||||    
T  48098146 ggtaatttggtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaatt 48098202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 48097403 - 48097344
Alignment:
Q  64 gagggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||||||||||||||| || ||||| || ||||||||| ||||    
T  48097403 gagggtaatttggtcatttacttgtgtcaataggaagtattctatatcaaaaaagtaatt 48097344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 21196474 - 21196420
Alignment:
Q  69 taatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||| ||||||||||||||||||||| |||||||| |||||| ||||||||||    
T  21196474 taattttgtcatttacttgtgtcaataggaaatattctatgtcagaaaagcaatt 21196420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 47642777 - 47642834
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||||||| ||||| || ||||| |||||| ||||||||||    
T  47642777 gggtaatttggtcatttacttgtgttaataggaagtattctatgtcagaaaagcaatt 47642834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 54922570 - 54922627
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||| |||||||| |||||||||||| || ||| |||||||||||||||||||    
T  54922570 gggtaatttagtcatttatttgtgtcaataggaagtatacaatgtcaaaaaagcaatt 54922627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 10036876 - 10036829
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| || |||||| ||||||||||||||||    
T  10036876 gtcatttacttgtgtcaataggaagtattcattgtcaaaaaagcaatt 10036829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 11377232 - 11377185
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||||| |||||| |||| |||||||||||    
T  11377232 gtcatttacttgtgtcaatagaaagtattcattgtcgaaaaagcaatt 11377185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 11379775 - 11379822
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  11379775 gtcatttacttgtgtcaatagaaagtattctatgtcagaaaagcaatt 11379822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 30191715 - 30191668
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| || ||||| |||||| ||||||||||    
T  30191715 gtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaatt 30191668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 34470291 - 34470244
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| || |||||| ||||||||||| ||||    
T  34470291 gtcatttacttgtgtcaataggaagtattcattgtcaaaaaagaaatt 34470244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 40469257 - 40469300
Alignment:
Q  85 ttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    |||||||||||| || ||||||||||||||||||||||| ||||    
T  40469257 ttgtgtcaataggaagtattcaatgtcaaaaaagcaattttcat 40469300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 46412520 - 46412473
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| || ||||| |||||| ||||||||||    
T  46412520 gtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaatt 46412473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 17074548 - 17074580
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  17074548 gtaaagtttcgtagaattctgaataagtttcga 17074580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 30194518 - 30194570
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||||||||||||| || ||||||  ||||||||| ||||| ||||    
T  30194518 gtcatttacttgtgtcaataggaagtattcatggtcaaaaaaacaattttcat 30194570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 37268100 - 37268152
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||| ||||||||| || |||||| ||||||||| |||||| ||||    
T  37268100 gtcatttacttatgtcaataggaagtattcattgtcaaaaatgcaattttcat 37268152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 42321768 - 42321728
Alignment:
Q  77 tcatttacttgtgtcaatagaaaatattcaatgtcaaaaaa 117  Q
    |||||||||||||||||||| || |||||| ||||||||||    
T  42321768 tcatttacttgtgtcaataggaagtattcattgtcaaaaaa 42321728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 45265669 - 45265637
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  45265669 gtaaagtttcgtagaattctgaataagtttcga 45265637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 47641194 - 47641162
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||| ||||||||||||||    
T  47641194 gtaaagtttcgtagaattttgaataaatttcga 47641162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 47642638 - 47642670
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  47642638 gtaaagtttcgtagaattctgaataactttcga 47642670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 47760928 - 47760980
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||||| ||||||| || ||||| |||||| |||||||||| ||||    
T  47760928 gtcatttacttgtatcaataggaagtattctatgtcagaaaagcaattttcat 47760980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 48098005 - 48098037
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  48098005 gtaaagtttcgtagaattctgaataactttcga 48098037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 49275382 - 49275430
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgt-caaaaaagcaatt 123  Q
    |||||||| |||||||||||||||||||| | ||| |||||||||||||    
T  49275382 gtcatttatttgtgtcaatagaaaatattgattgtccaaaaaagcaatt 49275430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 54921604 - 54921572
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  54921604 gtaaagtttcgtagaattctgaataagtttcga 54921572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 54922431 - 54922463
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  54922431 gtaaagtttcgtagaattctgaataactttcga 54922463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 9904642 - 9904697
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9904642 gtaatttggtcatttacttgtgtcaatagaaagtattcaatgtcaaaaaagcaatt 9904697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 22018484 - 22018431
Alignment:
Q  64 gagggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  22018484 gagggtaatttggtcatttacttgtgtcaatagaaaatattctatgtcaaaaaa 22018431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 22019633 - 22019689
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||| |||||||||||||| |||||| |||||||  ||||||||||| |||||    
T  22019633 ggtaatttagtcatttacttgtgccaataggaaatattttatgtcaaaaaaacaatt 22019689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 4221874 - 4221833
Alignment:
Q  24 agagagtcggtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||| ||| |||||||||||||||||||||||||| ||||||    
T  4221874 agagggtctgtaaagtttcgtagaattctgaataagtttcga 4221833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 9904512 - 9904553
Alignment:
Q  16 atatacatagagagtcggtaaagtttcgtagaattctgaata 57  Q
    ||||| |||||| ||| |||||||||||||||||||||||||    
T  9904512 atatatatagagggtctgtaaagtttcgtagaattctgaata 9904553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 55686263 - 55686324
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  55686263 ggtaatttgatcatttacttgtgtcaatagaaagtattcaatgtcaaaaaaacaattctcat 55686324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 9617268 - 9617209
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctc 126  Q
    ||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||    
T  9617268 ggtaatttgatcatttacttgtgtcaataggaagtattcgatgtcaaaaaagcaattctc 9617209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 35142900 - 35142838
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||||||| ||||||| ||||    
T  35142900 gggtaatttggtcatttacttgtgtcaataggaagcattcaatgtcaaaatagcaattttcat 35142838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 9618418 - 9618470
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagca 120  Q
    |||||||||||||||||||||||| |||| || ||||||||||||||||||||    
T  9618418 gtaatttggtcatttacttgtgtcgataggaagtattcaatgtcaaaaaagca 9618470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 40729285 - 40729231
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcatgt 130  Q
    ||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||    
T  40729285 gtcatttacttgtgtcaataggaaatattcattgtcaaaaaatcaattttcatgt 40729231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 38194560 - 38194609
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaa 117  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||||||    
T  38194560 gtaatttggtcatttacttgtgtcaataggaagtattctatgtcaaaaaa 38194609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 50910439 - 50910390
Alignment:
Q  16 atatacatagagagtcggtaaagtttcgtagaattctgaataaatttcga 65  Q
    ||||| |||||| ||| |||||||||||||||||||||||||||||||||    
T  50910439 atatatatagagggtctgtaaagtttcgtagaattctgaataaatttcga 50910390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 50911406 - 50911463
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||| ||||||||||||||||||||||| |  ||||||||| ||||||||||    
T  50911406 gggtaatttgatcatttacttgtgtcaatagaaagttatcaatgtcagaaaagcaatt 50911463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 52073565 - 52073504
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcatg 129  Q
    |||||||  |||||||||||||||||||| ||||||||| |||||||||| ||||| |||||    
T  52073565 gtaatttaatcatttacttgtgtcaataggaaatattcattgtcaaaaaaacaattttcatg 52073504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 52074661 - 52074718
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||| |||||||||| |||||||||||| |||||||||| |||||| |||||    
T  52074661 gggtaatttgatcatttacttatgtcaatagaaagtattcaatgttaaaaaaacaatt 52074718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 2774990 - 2775037
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||| ||||||| |||||| ||||||||||    
T  2774990 gtcatttacttgtgtcaatagagaatattctatgtcagaaaagcaatt 2775037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 10466590 - 10466543
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| || |||||| ||||||||||||||||    
T  10466590 gtcatttacttgtgtcaataggaagtattcattgtcaaaaaagcaatt 10466543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 11014357 - 11014303
Alignment:
Q  69 taatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||| | ||| || ||||| |||||||||||||||||    
T  11014357 taatttggtcatttacttgtgttagtaggaattattctatgtcaaaaaagcaatt 11014303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 69 - 123
Target Start/End: Complemental strand, 40730647 - 40730593
Alignment:
Q  69 taatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||| ||||||||| || ||||| |||||||| ||||||||    
T  40730647 taatttggtcatttacttttgtcaataggaagtattctatgtcaaagaagcaatt 40730593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 11014546 - 11014497
Alignment:
Q  16 atatacatagagagtcggtaaagtttcgtagaattctgaataaatttcga 65  Q
    ||||| |||||| ||| |||||||||||||||||||||||||| ||||||    
T  11014546 atatatatagagggtctgtaaagtttcgtagaattctgaataagtttcga 11014497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 35143848 - 35143897
Alignment:
Q  16 atatacatagagagtcggtaaagtttcgtagaattctgaataaatttcga 65  Q
    ||||| |||||||||| ||||| |||||||||||||||||||| ||||||    
T  35143848 atatatatagagagtctgtaaaatttcgtagaattctgaataagtttcga 35143897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 38193424 - 38193367
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||| ||||||||||||||||||||||||| || ||||| |||||| ||||| ||||    
T  38193424 gggtagtttggtcatttacttgtgtcaataggaagtattctatgtcagaaaagtaatt 38193367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 51029607 - 51029660
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcatg 129  Q
    ||||||||||||||||||||| || ||||| |||||| |||||||||| |||||    
T  51029607 gtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttcatg 51029660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 21168467 - 21168415
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||||||||||||| || ||||| |||||| |||||||||| ||||    
T  21168467 gtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttcat 21168415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 26592854 - 26592901
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||| ||||| ||||||||| | ||||||||||||||    
T  26592854 gtcatttacttgtgttaataggaaatattcattatcaaaaaagcaatt 26592901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 40732454 - 40732509
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||| |||||||||||||||||||| || ||||| |||||| |||| |||||    
T  40732454 gtaatttgatcatttacttgtgtcaataggaagtattctatgtcagaaaaacaatt 40732509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 45936656 - 45936609
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| || ||||| |||||| ||||||||||    
T  45936656 gtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaatt 45936609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 49790667 - 49790620
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| || ||||| |||||| ||||||||||    
T  49790667 gtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaatt 49790620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 31432830 - 31432784
Alignment:
Q  16 atatacatagagagtcggtaaagtttcgtagaattctgaataaattt 62  Q
    ||||| |||||  ||| ||||||||||||||||||||||||||||||    
T  31432830 atatatatagatggtctgtaaagtttcgtagaattctgaataaattt 31432784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 46518349 - 46518391
Alignment:
Q  81 ttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||| || ||||| |||||||||||||||||    
T  46518349 ttacttgtgtcaataggaagtattccatgtcaaaaaagcaatt 46518391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 51026034 - 51025992
Alignment:
Q  81 ttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||| || ||||| |||||||||||||||||    
T  51026034 ttacttgtgtcaataggaagtattctatgtcaaaaaagcaatt 51025992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 11015546 - 11015594
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaa 115  Q
    ||||||||| ||||||| |||||||||||| |||||||| |||| ||||    
T  11015546 ggtaatttgatcatttatttgtgtcaataggaaatattctatgttaaaa 11015594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 38193579 - 38193547
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  38193579 gtaaagtttcgtagaattctgaataactttcga 38193547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 40731479 - 40731447
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||| ||||||||||||||||||||||||||||    
T  40731479 gtaatgtttcgtagaattctgaataaatttcga 40731447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 43890405 - 43890457
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    |||||||||||| |||||||| || ||||| ||||| ||||||||||| ||||    
T  43890405 gtcatttacttgagtcaataggaagtattctatgtccaaaaagcaattttcat 43890457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 10602215 - 10602272
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  10602215 gggtaatttggtcatttacttgtgtcaataggaagtattcaatgtcaaaaaagcaatt 10602272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 44328592 - 44328539
Alignment:
Q  64 gagggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44328592 gagggtaatttggtcatttacttgtgtcaatagaaaatattctatgtcaaaaaa 44328539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 3259932 - 3259875
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  3259932 gggtaatttggtcatttacttgtgtcaatagaaagtattctatgtcagaaaagcaatt 3259875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 126
Target Start/End: Original strand, 3260223 - 3260281
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctc 126  Q
    ||||||||||||||||||||| |||||||||| ||||| |||| |||||||||||||||    
T  3260223 gtaatttggtcatttacttgtatcaatagaaagtattctatgttaaaaaagcaattctc 3260281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 15630453 - 15630505
Alignment:
Q  69 taatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaa 121  Q
    ||||||||||||||| |||||||||||| || |||||||||||||||||||||    
T  15630453 taatttggtcatttatttgtgtcaataggaagtattcaatgtcaaaaaagcaa 15630505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 123
Target Start/End: Original strand, 6978811 - 6978855
Alignment:
Q  79 atttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||    
T  6978811 atttacttgtgtcaataggaaatattcattgtcaaaaaagcaatt 6978855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 31297699 - 31297643
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||| |||||||||||||||||||| || ||||| |||||| ||||||||||    
T  31297699 ggtaatttgatcatttacttgtgtcaataggaagtattctatgtcagaaaagcaatt 31297643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Original strand, 5422306 - 5422353
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||||| |||||  ||||||||||||||||    
T  5422306 gtcatttacttgtgtcaatagaaagtattcgctgtcaaaaaagcaatt 5422353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 6172166 - 6172107
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctc 126  Q
    ||||| ||| |||||||||| ||||||||| || |||||||| |||||||||||||||||    
T  6172166 ggtaacttgatcatttacttatgtcaataggaagtattcaatatcaaaaaagcaattctc 6172107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 31298839 - 31298894
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||||||||||| || | ||| || ||||||||||||||    
T  31298839 gtaatttggtcatttacttgtgtcaataggaagttttctatatcaaaaaagcaatt 31298894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 6173073 - 6173135
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||| ||||||||||| || |||||| || |||||||| |||||||||||||| ||||    
T  6173073 gggtaatttagtcatttacttatgccaataggaagtattcaatatcaaaaaagcaattttcat 6173135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 22712218 - 22712264
Alignment:
Q  77 tcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||| || |||||| ||||||||||||||||    
T  22712218 tcatttacttgtgtcaataggaattattcattgtcaaaaaagcaatt 22712264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 15629333 - 15629284
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaa 117  Q
    |||||||| |||||||||||| ||||||| || |||||||||||||||||    
T  15629333 gtaatttgatcatttacttgtatcaataggaagtattcaatgtcaaaaaa 15629284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 31442 - 31410
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaa 98  Q
    |||||||||||||||||||||||||||||||||    
T  31442 gggtaatttggtcatttacttgtgtcaatagaa 31410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 23719358 - 23719306
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||||||||||||| || |||||| ||||||||||| |||| ||||    
T  23719358 gtcatttacttgtgtcaataggaagtattcattgtcaaaaaaggaattttcat 23719306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 24107030 - 24106978
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||||||||||||| || |||||| ||||||||||| |||| ||||    
T  24107030 gtcatttacttgtgtcaataggaagtattcattgtcaaaaaaggaattttcat 24106978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 44329741 - 44329797
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||| |||||||||||||| |||||| |||||||  ||||||||||| |||||    
T  44329741 ggtaatttagtcatttacttgtgccaataggaaatattttatgtcaaaaaaacaatt 44329797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 44655535 - 44655503
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||||||||||    
T  44655535 gtaaagtttcgtagaattctgaataaatttcga 44655503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 17112480 - 17112527
Alignment:
Q  72 tttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagc 119  Q
    |||||| | |||||||||||||||| |||||||| |||||||||||||    
T  17112480 tttggtaaattacttgtgtcaatagcaaatattctatgtcaaaaaagc 17112527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 27131372 - 27131423
Alignment:
Q  77 tcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||||||||||||||| ||||  |||||| |||||||||| ||||    
T  27131372 tcatttacttgtgtcaatagaaagtattttatgtcagaaaagcaattttcat 27131423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 130
Target Start/End: Complemental strand, 17537190 - 17537136
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcatgt 130  Q
    |||||||||||||| |||||  ||||||||| ||| |||||||||||| ||||||    
T  17537190 gtcatttacttgtgacaataagaaatattcattgtaaaaaaagcaattttcatgt 17537136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 65
Target Start/End: Original strand, 31298699 - 31298729
Alignment:
Q  35 aaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||||||||    
T  31298699 aaagtttcgtagaattctgaataaatttcga 31298729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 6172285 - 6172236
Alignment:
Q  16 atatacatagagagtcggtaaagtttcgtagaattctgaataaatttcga 65  Q
    ||||| ||||||  || |||||||||||||||||||||||||| ||||||    
T  6172285 atataaatagaggttctgtaaagtttcgtagaattctgaataagtttcga 6172236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 10602144 - 10602176
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  10602144 gtaaagtttcgtagaattctgaataactttcga 10602176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 15630305 - 15630337
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  15630305 gtaaagtttcgtagaattctgaataactttcga 15630337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 34414936 - 34414968
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  34414936 gtaaagtttcgtagaattctgaataactttcga 34414968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 36584312 - 36584344
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  36584312 gtaaagtttcgtagaattctgaataactttcga 36584344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 36584471 - 36584526
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||| ||||| ||||||||| ||||| || |||||||||| ||||||||||||    
T  36584471 ggtaatttagtcatgtacttgtgt-aataggaagtattcaatgtaaaaaaagcaatt 36584526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 130554 - 130614
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||    
T  130554 gtaatttggtcatttacttgtgtcaataggaagtattctatgtcaaaaaagcaattttcat 130614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 127264 - 127207
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||||||| |||| || |||||  ||||| ||||||||||    
T  127264 gggtaatttggtcatttacttgtgtcgataggaagtattctttgtcagaaaagcaatt 127207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 2809233 - 2809290
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||||||||||||  || ||||||||||||||||| |||||    
T  2809233 gggtaatttggtcatttacttgtgtcaataagaagtattcaatgtcaaaaaaacaatt 2809290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 27641592 - 27641533
Alignment:
Q  64 gagggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||| ||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  27641592 gaggataatttgatcatttacttgtgtcaatagaaagtattctatgtcagaaaagcaatt 27641533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 40678281 - 40678335
Alignment:
Q  69 taatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||||||||||||||| || ||||| ||||||||||| |||||    
T  40678281 taatttggtcatttacttgtgtcaataggaagtattctatgtcaaaaaaacaatt 40678335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 42001844 - 42001906
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    |||||||||||||||||||||||||||| |  || |||| |||||||||||||||||| ||||    
T  42001844 gggtaatttggtcatttacttgtgtcaaaaagaagtattgaatgtcaaaaaagcaattttcat 42001906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 33074858 - 33074910
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||||||||||||  ||||||||| |||||||||||||||| ||||    
T  33074858 gtcatttacttgtgtcaatatgaaatattcattgtcaaaaaagcaattttcat 33074910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 117
Target Start/End: Complemental strand, 42000668 - 42000617
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaa 117  Q
    ||||||||||||||||||||||| ||||||| || |||||||||| ||||||    
T  42000668 gggtaatttggtcatttacttgtatcaataggaagtattcaatgtaaaaaaa 42000617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 8036300 - 8036253
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| || ||||| |||||| ||||||||||    
T  8036300 gtcatttacttgtgtcaataggaagtattctatgtcagaaaagcaatt 8036253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 123
Target Start/End: Complemental strand, 38032200 - 38032149
Alignment:
Q  72 tttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||| | |||||||||||||||| |||||||| |||||||||| ||||||    
T  38032200 tttggtaaattacttgtgtcaataggaaatattctatgtcaaaaaggcaatt 38032149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 42167200 - 42167153
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| || |||||| |||||||||| |||||    
T  42167200 gtcatttacttgtgtcaataggaagtattcattgtcaaaaaaccaatt 42167153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 16583235 - 16583193
Alignment:
Q  81 ttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||| || ||||| |||||||||||||||||    
T  16583235 ttacttgtgtcaataggaagtattccatgtcaaaaaagcaatt 16583193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 42000837 - 42000808
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaattt 62  Q
    ||||||||||||||||||||||||||||||    
T  42000837 gtaaagtttcgtagaattctgaataaattt 42000808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 42001675 - 42001707
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  42001675 gtaaagtttcgtagaattctgaataattttcga 42001707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 37505013 - 37505066
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaa 121  Q
    ||||||||||||||||||||||||||||| || |||||||| ||||||||||||    
T  37505013 gtaatttggtcatttacttgtgtcaataggaagtattcaatatcaaaaaagcaa 37505066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 23344493 - 23344545
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||| ||||    
T  23344493 gtcatttacttgtgttaatagaaaatattcattgtcaaaaaagcaattttcat 23344545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 51936600 - 51936660
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||| ||||||||||| ||||||||| || ||||||||||||||||||||||| ||||    
T  51936600 gtaatttagtcatttacttatgtcaataggaagtattcaatgtcaaaaaagcaattttcat 51936660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 68 - 122
Target Start/End: Complemental strand, 34814537 - 34814483
Alignment:
Q  68 gtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaat 122  Q
    ||||||||||||||||||||||||||||| || ||||| ||||||||||| ||||    
T  34814537 gtaatttggtcatttacttgtgtcaataggaagtattctatgtcaaaaaaacaat 34814483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 7998244 - 7998187
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||| ||||||||||  || |||||||||||||||||| ||||    
T  7998244 gggtaatttggtcatttacctgtgtcaatatgaattattcaatgtcaaaaaagaaatt 7998187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 16002657 - 16002714
Alignment:
Q  67 ggtaatttggtcatttacttgtgtcaatag-aaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||| |||||||||||||||||||| |||| |||| |||||||||||||||||    
T  16002657 ggtaatttgatcatttacttgtgtcaatagaaaaagattctatgtcaaaaaagcaatt 16002714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 37504641 - 37504584
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||  ||||||||||||||||||||||| |||||||| | ||||||||||||    
T  37504641 gggtaatttaatcatttacttgtgtcaatagaaagtattcaatattaaaaaagcaatt 37504584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 17684540 - 17684493
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| || |||||| ||||||||||||||||    
T  17684540 gtcatttacttgtgtcaataggaagtattcattgtcaaaaaagcaatt 17684493  T

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Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 39855476 - 39855429
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||| || |||||| ||||||||||||||||    
T  39855476 gtcatttacttgtgtcaataggaagtattcattgtcaaaaaagcaatt 39855429  T

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Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 48898944 - 48898885
Alignment:
Q  64 gagggtaatttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||||||||||||||||||| ||||||||  |||||||  |||||| ||||||||||    
T  48898944 gagggtaatttggtcatttacttttgtcaatatgaaatatttgatgtcagaaaagcaatt 48898885  T

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Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Original strand, 46201226 - 46201268
Alignment:
Q  81 ttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  46201226 ttacttgtgtcaataggaaatattccatgtcaaaaaagcaatt 46201268  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 7998413 - 7998381
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||||||||||    
T  7998413 gtaaagtttcgtagaattctgaataaatttcga 7998381  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 12792322 - 12792374
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||||||||| ||| || |||||| |||||||||||||||| ||||    
T  12792322 gtcatttacttgtgtcagtaggaagtattcattgtcaaaaaagcaattttcat 12792374  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 129
Target Start/End: Original strand, 15356391 - 15356443
Alignment:
Q  77 tcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcatg 129  Q
    |||||||||||||||||||| || ||||| |||||| |||||||||| |||||    
T  15356391 tcatttacttgtgtcaataggaagtattctatgtcagaaaagcaattttcatg 15356443  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 34815676 - 34815728
Alignment:
Q  71 atttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaatt 123  Q
    ||||||| |||| ||||||||||||| |||||||| |||||| ||||||||||    
T  34815676 atttggtgatttgcttgtgtcaataggaaatattctatgtcagaaaagcaatt 34815728  T

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Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 37780032 - 37780084
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    ||||||||||||||||||||| |||||||| |||||| |||| ||||| ||||    
T  37780032 gtcatttacttgtgtcaataggaaatattctatgtcagaaaaacaattttcat 37780084  T

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Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 128
Target Start/End: Original strand, 49263902 - 49263954
Alignment:
Q  76 gtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagcaattctcat 128  Q
    |||||||||||||||||||||||| ||||| |||| | |||||||||| ||||    
T  49263902 gtcatttacttgtgtcaatagaaagtattctatgtgagaaaagcaattttcat 49263954  T

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Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 34815523 - 34815555
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  34815523 gtaaagtttcgtagaattctgaataactttcga 34815555  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 45423324 - 45423352
Alignment:
Q  66 gggtaatttggtcatttacttgtgtcaat 94  Q
    |||||||||||||||||||||||||||||    
T  45423324 gggtaatttggtcatttacttgtgtcaat 45423352  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 49259918 - 49259870
Alignment:
Q  72 tttggtcatttacttgtgtcaatagaaaatattcaatgtcaaaaaagca 120  Q
    |||||| | ||| ||||| ||||||||||||||| ||||||||||||||    
T  49259918 tttggtaaattatttgtgccaatagaaaatattctatgtcaaaaaagca 49259870  T

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Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 33 - 65
Target Start/End: Original strand, 51936458 - 51936490
Alignment:
Q  33 gtaaagtttcgtagaattctgaataaatttcga 65  Q
    |||||||||||||||||||||||||| ||||||    
T  51936458 gtaaagtttcgtagaattctgaataactttcga 51936490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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