View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18749_low_6 (Length: 466)
Name: NF18749_low_6
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18749_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 18 - 450
Target Start/End: Original strand, 40953036 - 40953467
Alignment:
| Q |
18 |
atatgcagagtagtaaatcaagtctctaatttatgaaacaagataagaccataaaaatgtaatctaatatctaaatagtagaaggnnnnnnnnntgcatc |
117 |
Q |
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| T |
40953036 |
atatgcagagtagtaaatcaagtctctaatttatgaaacaagataagaccataaaaatgtaatctaatatctaaatagtagaaggaaaaaaaa-tgcatc |
40953134 |
T |
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| Q |
118 |
tcaatttgtagaatcaagttactcacatatcaaaaagcttagtccttgtccaccagtgacctgaattgaatataagaacatcagaatcaacccattcatg |
217 |
Q |
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| T |
40953135 |
tcaatttgtagaatcaagttactcacatatcaaaaagcttagtccttgtccaccagtgacctgaattgaatataagaacatcagaatcaacccattcatg |
40953234 |
T |
|
| Q |
218 |
gctaatatcatctatcttgtccaatttcagtgtcgtcttcactcttttaggcgcaaatctaggcaccgaaccaggcttcaccagaaaaacagaacgataa |
317 |
Q |
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| T |
40953235 |
gctaatatcatctatcttgtccaatttcagtgtcgtcttcactcttttaggcgcaaatctaggcaccgaaccaggcttcaccagaaaaacagaacgataa |
40953334 |
T |
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| Q |
318 |
aaatcgattctaacatcaaaagaactaaacctgacacctagaaacctaatctgtttggtgatcttattgcctttgatttcataaacactcttcttattct |
417 |
Q |
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| T |
40953335 |
aaatcgattctaacatcaaaagaactaaaccttacacctagaaacctaatctgtttggtgatcttattgcctttgatttcataaacactcttcttattct |
40953434 |
T |
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| Q |
418 |
caacacctgtcattaacatacatatcaaagact |
450 |
Q |
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| T |
40953435 |
caacacctgtcattaacatacatatcaaagact |
40953467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 167 - 241
Target Start/End: Complemental strand, 39083985 - 39083911
Alignment:
| Q |
167 |
ccaccagtgacctgaattgaatataagaacatcagaatcaacccattcatggctaatatcatctatcttgtccaa |
241 |
Q |
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|||||||||||| | |||||||||||||| ||| ||||||| ||||| ||| || |||||||||| ||||||||| |
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| T |
39083985 |
ccaccagtgaccagtattgaatataagaatatctgaatcaatccattgatgacttatatcatctaacttgtccaa |
39083911 |
T |
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