View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18749_low_9 (Length: 392)

Name: NF18749_low_9
Description: NF18749
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18749_low_9
NF18749_low_9
[»] chr8 (10 HSPs)
chr8 (119-392)||(44312081-44312350)
chr8 (109-271)||(43895789-43895946)
chr8 (226-392)||(44301285-44301455)
chr8 (289-392)||(43896006-43896109)
chr8 (109-199)||(44306213-44306305)
chr8 (289-386)||(44306459-44306556)
chr8 (227-271)||(44306353-44306397)
chr8 (33-151)||(44301112-44301230)
chr8 (128-199)||(44305709-44305779)
chr8 (33-75)||(44312021-44312065)
[»] chr3 (1 HSPs)
chr3 (226-392)||(4084057-4084221)
[»] chr6 (2 HSPs)
chr6 (138-212)||(8159402-8159474)
chr6 (352-392)||(8159271-8159311)
[»] chr4 (1 HSPs)
chr4 (300-387)||(18701618-18701708)


Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-106; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 119 - 392
Target Start/End: Original strand, 44312081 - 44312350
Alignment:
Q  119 ttaacatgacatttacactaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaaaatgcagaacacaacnnnn 218  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||        
T  44312081 ttaacatgacatttgcactaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaa--tgcagaacacaacaaaa 44312178  T
Q  219 nnnnngagagtaactactaactaatcagagatcaataattaagcaacaaattcaccatnnnnnnntaagttataaataagcaacaaaccaaagcaaagtt 318  Q
         |||  ||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| ||||    
T  44312179 aaaatgag--taactactaactaatcagagatcaataattaagcaacaaattcaccataaaaaaataagttataaataagcaacaaaccaaagcatagtt 44312276  T
Q  319 aacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatttctc 392  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44312277 aacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatttctc 44312350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 109 - 271
Target Start/End: Original strand, 43895789 - 43895946
Alignment:
Q  109 ggatcaagtcttaacatgacatttacactaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaaaatgcagaa 208  Q
    |||||||||||||||||||||||| |||||||||||||||||| |||||| ||||| ||||||||| |||||||||||||||  ||||  ||||||||||    
T  43895789 ggatcaagtcttaacatgacatttgcactaaatgttaaacttatgaatcacatagacaatcttgacggcagagataggatcaggtgtt--aaatgcagaa 43895886  T
Q  209 cacaacnnnnnnnnngagagtaactactaactaatcagagatcaataattaagcaacaaattc 271  Q
    |||||             |||||||||||| ||||||||||||||||||||||||||||||||    
T  43895887 cacaataaaaaattt---agtaactactaaataatcagagatcaataattaagcaacaaattc 43895946  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 226 - 392
Target Start/End: Original strand, 44301285 - 44301455
Alignment:
Q  226 gagtaactactaactaatcagagatcaataattaagcaacaaattcaccatnnnnnnntaagttataaataagcaacaaaccaaagcaaagttaacaagc 325  Q
    |||||||||||||||||||||||||||||||||||||| || ||| |||||       |||||||||||||||||||||| || ||||||| ||||||||    
T  44301285 gagtaactactaactaatcagagatcaataattaagcagcagatttaccataaaaaa-taagttataaataagcaacaaaacatagcaaagctaacaagc 44301383  T
Q  326 caaaccaactggcgaagtaggatcaattctc-----ttgaatgaatccattcacaccatttgaaaatttctc 392  Q
    ||||| ||||||  ||||||||||| ||| |     | ||||||||| ||||||||||||||||||||||||    
T  44301384 caaacaaactgggtaagtaggatcatttcactggaatggaatgaatcaattcacaccatttgaaaatttctc 44301455  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 289 - 392
Target Start/End: Original strand, 43896006 - 43896109
Alignment:
Q  289 tataaataagcaacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatt 388  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||  ||||||||||| ||| || |||||||||||| |||||||||||||||||    
T  43896006 tataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcacttccctagaatgaatccatccacaccatttgaaaatt 43896105  T
Q  389 tctc 392  Q
    ||||    
T  43896106 tctc 43896109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 44306213 - 44306305
Alignment:
Q  109 ggatcaagtcttaacatgacatttacactaaatgttaaacttaagaatcaaatagataatcttgacagc--agagataggatcaactgttaaa 199  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||  |||||||||||||| |||||||    
T  44306213 ggatcaagtcttaacatgacatttgcactaaatgttaaacttaagaatcacatagacaatcttgacagcagagagataggatcaagtgttaaa 44306305  T

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Target: chr8; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 289 - 386
Target Start/End: Original strand, 44306459 - 44306556
Alignment:
Q  289 tataaataagcaacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaa 386  Q
    |||||||||||||||||||| ||||||| |||||||||||| |||||||  ||||||||||| ||| || ||||||||||||||||||||||||||||    
T  44306459 tataaataagcaacaaaccatagcaaagctaacaagccaaagcaactgggtaagtaggatcatttccctagaatgaatccattcacaccatttgaaaa 44306556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 44306353 - 44306397
Alignment:
Q  227 agtaactactaactaatcagagatcaataattaagcaacaaattc 271  Q
    |||||||||||| ||||||||||||||||||||||||||||||||    
T  44306353 agtaactactaaataatcagagatcaataattaagcaacaaattc 44306397  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 44301112 - 44301230
Alignment:
Q  33 taacaaaaaataa--atgttactttgcctctgtaagttatcttaagtaaccctgttttgcnnnnnnnatcagtatgaaggatcaagtcttaacatgacat 130  Q
    |||||||||||||  |||||| |||||||||| || |||||||   ||||| ||||||||       ||||||||| |||||||| ||||| ||||||||    
T  44301112 taacaaaaaataattatgttattttgcctctggaaattatcttct-taaccttgttttgctttgttgatcagtatggaggatcaaatctta-catgacat 44301209  T
Q  131 ttacactaaatgttaaactta 151  Q
    || ||||||||||||||||||    
T  44301210 ttgcactaaatgttaaactta 44301230  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 128 - 199
Target Start/End: Original strand, 44305709 - 44305779
Alignment:
Q  128 catttacactaaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaa 199  Q
    ||||||||||||  || ||||||  |||||| ||||||| |||||||||||||||| ||||||| |||||||    
T  44305709 catttacactaaccgtcaaacttt-gaatcacatagatattcttgacagcagagatgggatcaattgttaaa 44305779  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 44312021 - 44312065
Alignment:
Q  33 taacaaaaaataaa--tgttactttgcctctgtaagttatcttaa 75  Q
    ||||||||||||||  ||||| |||||||||||||||||||||||    
T  44312021 taacaaaaaataaaaatgttattttgcctctgtaagttatcttaa 44312065  T

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Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 226 - 392
Target Start/End: Original strand, 4084057 - 4084221
Alignment:
Q  226 gagtaactactaactaatcagagatcaataattaagcaacaaattcaccatnnnnnnntaagttataaataagcaacaaaccaaagcaaagttaacaagc 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||| || |||| ||||||||    
T  4084057 gagtaactactaactaatcagagatcaataattaagcaacaaattcaccataaaaaa-taagttataaataagcaacaaaccatagtaaagctaacaagc 4084155  T
Q  326 caaaccaactggcgaagtaggatcaattctcttgaatgaatccattcacaccatttgaaaatttctc 392  Q
    ||||||||||||  ||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  4084156 caaaccaactggt-aagtaggatcatttctctggaatgaatccattcacaccatttgaaaatttctc 4084221  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 138 - 212
Target Start/End: Complemental strand, 8159474 - 8159402
Alignment:
Q  138 aaatgttaaacttaagaatcaaatagataatcttgacagcagagataggatcaactgttaaaaatgcagaacaca 212  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||  ||||||||||||||    
T  8159474 aaatgttaaacttaagaatcaaatagataatattgacaacagagataggatcaagtgtt--aaatgcagaacaca 8159402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 352 - 392
Target Start/End: Complemental strand, 8159311 - 8159271
Alignment:
Q  352 ttctcttgaatgaatccattcacaccatttgaaaatttctc 392  Q
    |||||| ||||||||| ||||||||||||||||||||||||    
T  8159311 ttctctagaatgaatcaattcacaccatttgaaaatttctc 8159271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 300 - 387
Target Start/End: Original strand, 18701618 - 18701708
Alignment:
Q  300 aacaaaccaaagcaaagttaacaagccaaaccaactggcgaagtaggatcaat---tctcttgaatgaatccattcacaccatttgaaaat 387  Q
    |||||||||  |||||| ||| || |||||||||| ||  ||||||||||| |   ||||| ||||||||| |||||||||||||||||||    
T  18701618 aacaaaccattgcaaagctaataaaccaaaccaacagggtaagtaggatcattatttctctagaatgaatcaattcacaccatttgaaaat 18701708  T

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