View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1874_high_1 (Length: 357)
Name: NF1874_high_1
Description: NF1874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1874_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 42744074 - 42743745
Alignment:
| Q |
10 |
attattctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42744074 |
attattctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcc |
42743975 |
T |
|
| Q |
110 |
tattagaaacccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
42743974 |
tattagaaacccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgca |
42743875 |
T |
|
| Q |
210 |
agtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42743874 |
agtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcag |
42743775 |
T |
|
| Q |
310 |
atattttggctggttttgaagctgccataa |
339 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
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|
| T |
42743774 |
atattttggctggttttgaagctgcaataa |
42743745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 42753433 - 42753104
Alignment:
| Q |
10 |
attattctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42753433 |
attattctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcc |
42753334 |
T |
|
| Q |
110 |
tattagaaacccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgca |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
42753333 |
tattagaaacccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaatttcgttgccaatgca |
42753234 |
T |
|
| Q |
210 |
agtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcag |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42753233 |
agtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcag |
42753134 |
T |
|
| Q |
310 |
atattttggctggttttgaagctgccataa |
339 |
Q |
| |
|
||||||||||||||||||||||||| |||| |
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|
| T |
42753133 |
atattttggctggttttgaagctgcaataa |
42753104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 339
Target Start/End: Original strand, 42734443 - 42734765
Alignment:
| Q |
14 |
ttctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctatt |
113 |
Q |
| |
|
|||||||||||| | |||||||||| |||||||| |||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||||| |
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|
| T |
42734443 |
ttctatatgctcctgttttgaattttaattacatccttgtaggaagcttattggcgcaagatatttttacaaaggctatatggcagtgccaattcctatt |
42734542 |
T |
|
| Q |
114 |
agaaacccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgcaagtg |
213 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
42734543 |
agaaacccaaatgaaacattcaatagtgcccgtgacagtgtaggtcatggttcacatactttatcaactgctggaggaaattttgttgctaatgcaagtg |
42734642 |
T |
|
| Q |
214 |
tatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcagatat |
313 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| | | | ||| | ||||||||||| |
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|
| T |
42734643 |
tatttggctatggaaatggaacagcaagtggtggatcgccaaaagcacgagtttccgcctataaggtttgttggg--gttcg-tgttatgatgcagatat |
42734739 |
T |
|
| Q |
314 |
tttggctggttttgaagctgccataa |
339 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
42734740 |
tttggctggttttgaagctgccataa |
42734765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 14 - 339
Target Start/End: Complemental strand, 42763044 - 42762729
Alignment:
| Q |
14 |
ttctatatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctatt |
113 |
Q |
| |
|
|||||||||||| || |||||||||| |||||| ||||||| |||||||||||||||||||||||| ||||||| ||||||| | |||| | |
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|
| T |
42763044 |
ttctatatgctcctattttgaatttt-attacaattttgtagaaagcttattggagcaagatatttttttaaaggctttctggca------aatccttat |
42762952 |
T |
|
| Q |
114 |
agaaacccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgcaagtg |
213 |
Q |
| |
|
||| | ||||| | | | |||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
42762951 |
agagccaaaaatgtatcgcttcatagtgcacgggatagtgaaggtcatggttcacacactttatcaactgctggaggaaatttcgttgctaatgcaagtg |
42762852 |
T |
|
| Q |
214 |
tatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcagatat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||| || |
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|
| T |
42762851 |
tatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgg---gatggatgttatgatgcagacat |
42762755 |
T |
|
| Q |
314 |
tttggctggttttgaagctgccataa |
339 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
42762754 |
tttggctggttttgaagctgccataa |
42762729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 130 - 339
Target Start/End: Complemental strand, 42717326 - 42717120
Alignment:
| Q |
130 |
cattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgcaagtgtatttggcaatggaaa |
229 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||| || |
|
|
| T |
42717326 |
catttaatagtgcacgtgacattgatggtcatggtacacatactttatcaactgccggaggaaattttgttgctaatgcaagtgtatttggctatggcaa |
42717227 |
T |
|
| Q |
230 |
tggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcagatattttggctggttttgaa |
329 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| | |||| | ||||||||||||||||||||||||||| |
|
|
| T |
42717226 |
tggaacagcaagtggtggatcgccaaaagcacgagttgtagcctataaggtttgttggga---ttcatgttatgatgcagatattttggctggttttgaa |
42717130 |
T |
|
| Q |
330 |
gctgccataa |
339 |
Q |
| |
|
|||||||||| |
|
|
| T |
42717129 |
gctgccataa |
42717120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 53 - 287
Target Start/End: Complemental strand, 42769895 - 42769667
Alignment:
| Q |
53 |
taggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaacccaaatgaaacattcaatagtgcacgtgacttt |
152 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| |||||| | || || | | |||||| ||||||| |||||||||| |||||| |
|
|
| T |
42769895 |
taggaagctaattggagcaagatatttttacaaaggctatttggcaga------tgctggtaaatccacaaatgtaacattccatagtgcacgcgacttt |
42769802 |
T |
|
| Q |
153 |
gaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcac |
252 |
Q |
| |
|
|| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42769801 |
gatggtcatggttcacatactttatcaaccgcgggaggaaattttgttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcac |
42769702 |
T |
|
| Q |
253 |
caaaagcacgagttgcagcctataaggtttgttgg |
287 |
Q |
| |
|
| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
42769701 |
ctaacgcacgagttgcggcctataaggtatgttgg |
42769667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 42717406 - 42717371
Alignment:
| Q |
53 |
taggaagcttattggagcaagatattttaacaaagg |
88 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42717406 |
taggaagcttattggagcaagatatttttacaaagg |
42717371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 23040409 - 23040729
Alignment:
| Q |
19 |
tatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcagtgccaattcctattagaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
23040409 |
tatgctcatactttgaatttttattacatctttgtaggaagcttattggagcaagatattttaacaaaggctatctggcaatgccaattcctattagaga |
23040508 |
T |
|
| Q |
119 |
cccaaatgaaacattcaatagtgcacgtgactttgaaggtcatggttcacatactttatcaactgctggaggaaattttgttgcaaatgcaagtgtattt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
23040509 |
cccaaatgaaacattcaatagtgcacgtgactttgatggtcatggttcacatactttatcaactgttggaggaaatttcgttgctaatgcgagtgtattt |
23040608 |
T |
|
| Q |
219 |
ggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgcagatattttgg |
318 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| |||||| |||||||||||||||| |
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|
| T |
23040609 |
ggcaatggccgaggaacagcaagtggtggatcaccaaaagctcgagttgcagcctataaggtttgctggggggatttatgtcatgatgcagatattttgg |
23040708 |
T |
|
| Q |
319 |
ctggttttgaagctgccataa |
339 |
Q |
| |
|
|||||||||||||||| |||| |
|
|
| T |
23040709 |
ctggttttgaagctgcaataa |
23040729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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