View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1874_low_2 (Length: 330)
Name: NF1874_low_2
Description: NF1874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1874_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 318
Target Start/End: Complemental strand, 32846122 - 32845820
Alignment:
| Q |
16 |
atgttaaactaatttagaacaaagtctgaatgaaatcaatggtaaaaataaaggtgttacagtgcaaatatttcttaatttcaaatgaacttaaaaaaga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32846122 |
atgttaaactaatttagaacaaagtctgagtgaaatcaatggtaaaaataaaggtgttacagtgcaaatatttcttaatttcaaatgaacttaaaaaaga |
32846023 |
T |
|
| Q |
116 |
acacaacttacaactgcaacctccagatcttccaccaccatccctttcaggtaaccactgattaatcagggtttttgatttgagattttgagtatgaagt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
32846022 |
acacaacttacaactgcaacctccagatctgccaccaccatccctttcaggtaaccactgattaattagggtttttgatttgagattttgagtatgaagt |
32845923 |
T |
|
| Q |
216 |
ttctcaactcactgtatggtttttgatttggggaacatacaaaagagattaacagattatttcatctgtttctgatatgagcgaaaaattggatctgttt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32845922 |
ttctcaactcactgtatggtttttgatttggggaacatacaaaaaagattaacagattatttcatctgtttctgatatgagcgaaaaattggatctgttt |
32845823 |
T |
|
| Q |
316 |
gtg |
318 |
Q |
| |
|
||| |
|
|
| T |
32845822 |
gtg |
32845820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University