View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1874_low_5 (Length: 299)
Name: NF1874_low_5
Description: NF1874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1874_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 34 - 277
Target Start/End: Original strand, 23694851 - 23695106
Alignment:
| Q |
34 |
tttttgaatcggttacaccaatttaaaaagttatttcactaatttaaagagtgttgaacgaaataattaa-------------aatgtggttaattctcg |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
23694851 |
tttttgaatcggttacaccaatttaaaaagtgatttcactaatttaaagagtgctgaacgaaataattaacaaccattttaaaaaggtggttaattctcg |
23694950 |
T |
|
| Q |
121 |
ttcagcgaaaggtaataaatgaaaaatatagcaag-ccaagataaaacactagtctaaacaatattaaacaagtaaaaatataacaagggatgctcagaa |
219 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
23694951 |
tttaacgaaaggtaataaatgaaaaatatagcaagtccaagataaaacactagtctaaacaatattaaacaagtaaaaatataacaagggatgctctaaa |
23695050 |
T |
|
| Q |
220 |
aaattaaacaataatataacaatagtatgaagtcctaattaagttgtagtggggtagc |
277 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
23695051 |
aaattaaacaat--tataacaatagtaagaagtcctaattaagttgtagtgaggtagc |
23695106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University