View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1874_low_8 (Length: 217)
Name: NF1874_low_8
Description: NF1874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1874_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 46560259 - 46560446
Alignment:
| Q |
16 |
atctcaacgcagtaaaaacctcaaaattctcacccgtnnnnnnnnnnnnnncaggagcaatcatcaatgacaatacattattataaagcacaaaacccca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46560259 |
atctcaacgcagtaaaaacctcaaaattctcaccagtcaaaaaccaaaaaacaggagcaatcatcaatgacaatacattattataaagcacaaaacccca |
46560358 |
T |
|
| Q |
116 |
agtattcaatccaagactcataaccatatgcttaatataaaccatctcagtagtaatggtaaccaaataagcaaaagcccaagaataa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
46560359 |
agtattcaatccaagactcataaccatatgcttaatataaaccatctcagtagtaatggtaaccaaataagcaaaagcccaggaataa |
46560446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University