View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1874_low_9 (Length: 216)

Name: NF1874_low_9
Description: NF1874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1874_low_9
NF1874_low_9
[»] scaffold0021 (1 HSPs)
scaffold0021 (20-200)||(166769-166948)
[»] chr6 (11 HSPs)
chr6 (20-200)||(11377287-11377467)
chr6 (20-200)||(8998337-8998517)
chr6 (20-200)||(27747319-27747499)
chr6 (20-192)||(9007506-9007678)
chr6 (20-192)||(18163957-18164129)
chr6 (20-192)||(24928442-24928614)
chr6 (20-192)||(31360711-31360883)
chr6 (20-192)||(16901838-16902010)
chr6 (122-200)||(17946024-17946102)
chr6 (20-192)||(25897985-25898157)
chr6 (20-93)||(29563224-29563297)
[»] chr3 (12 HSPs)
chr3 (20-200)||(25507679-25507859)
chr3 (20-200)||(19688288-19688468)
chr3 (20-192)||(28361006-28361178)
chr3 (20-192)||(8976738-8976910)
chr3 (20-192)||(9541027-9541199)
chr3 (20-192)||(16405501-16405673)
chr3 (31-192)||(40089984-40090145)
chr3 (31-134)||(2158752-2158855)
chr3 (25-192)||(6426204-6426371)
chr3 (34-192)||(48982206-48982364)
chr3 (55-140)||(4363417-4363502)
chr3 (20-68)||(16027196-16027244)
[»] chr8 (11 HSPs)
chr8 (20-200)||(45495543-45495723)
chr8 (20-192)||(20747910-20748082)
chr8 (25-200)||(19754201-19754376)
chr8 (20-192)||(21209247-21209419)
chr8 (20-192)||(12919105-12919277)
chr8 (20-192)||(14887966-14888138)
chr8 (50-192)||(25047691-25047833)
chr8 (50-192)||(33598212-33598354)
chr8 (20-192)||(18236218-18236390)
chr8 (20-192)||(18245669-18245841)
chr8 (20-192)||(22834630-22834802)
[»] chr7 (12 HSPs)
chr7 (20-200)||(610223-610403)
chr7 (20-175)||(15179025-15179180)
chr7 (20-192)||(16138461-16138633)
chr7 (20-192)||(5388192-5388364)
chr7 (20-192)||(6538369-6538541)
chr7 (20-192)||(8504941-8505113)
chr7 (20-192)||(9541517-9541689)
chr7 (20-192)||(26354576-26354748)
chr7 (20-192)||(32102272-32102444)
chr7 (20-192)||(46501006-46501178)
chr7 (20-192)||(44901248-44901421)
chr7 (20-192)||(14641095-14641267)
[»] chr5 (14 HSPs)
chr5 (20-200)||(724813-724993)
chr5 (20-200)||(15327102-15327282)
chr5 (20-200)||(18711487-18711667)
chr5 (20-192)||(30450917-30451089)
chr5 (20-173)||(24416118-24416271)
chr5 (20-192)||(20951753-20951925)
chr5 (20-192)||(26198602-26198774)
chr5 (20-192)||(27416040-27416212)
chr5 (20-192)||(33943212-33943384)
chr5 (20-188)||(18383632-18383800)
chr5 (34-192)||(5604103-5604261)
chr5 (20-192)||(24296896-24297068)
chr5 (20-192)||(19382056-19382228)
chr5 (20-192)||(22454156-22454328)
[»] chr4 (8 HSPs)
chr4 (20-200)||(115639-115819)
chr4 (20-200)||(14935789-14935969)
chr4 (20-192)||(26815780-26815952)
chr4 (20-192)||(54696101-54696273)
chr4 (20-192)||(6696110-6696282)
chr4 (20-192)||(17155308-17155480)
chr4 (20-192)||(16268948-16269120)
chr4 (55-140)||(18127313-18127398)
[»] scaffold0096 (1 HSPs)
scaffold0096 (20-200)||(52506-52686)
[»] scaffold0049 (2 HSPs)
scaffold0049 (20-200)||(18479-18659)
scaffold0049 (20-192)||(84865-85037)
[»] chr2 (11 HSPs)
chr2 (26-200)||(24992550-24992724)
chr2 (20-192)||(27166257-27166429)
chr2 (20-192)||(9510041-9510213)
chr2 (20-192)||(18655110-18655282)
chr2 (20-192)||(45018242-45018414)
chr2 (20-158)||(22906037-22906175)
chr2 (34-192)||(1794488-1794646)
chr2 (25-188)||(22102426-22102589)
chr2 (31-134)||(15826022-15826125)
chr2 (84-158)||(13945371-13945445)
chr2 (84-158)||(14086560-14086634)
[»] scaffold0500 (1 HSPs)
scaffold0500 (20-192)||(9434-9606)
[»] scaffold0028 (2 HSPs)
scaffold0028 (20-192)||(100615-100787)
scaffold0028 (20-122)||(85312-85414)
[»] scaffold0313 (1 HSPs)
scaffold0313 (20-192)||(13449-13621)
[»] scaffold0254 (1 HSPs)
scaffold0254 (20-192)||(14256-14428)
[»] scaffold0003 (1 HSPs)
scaffold0003 (32-192)||(148917-149077)
[»] chr1 (3 HSPs)
chr1 (20-192)||(14278373-14278545)
chr1 (20-192)||(16158775-16158947)
chr1 (31-134)||(20174847-20174950)
[»] scaffold0141 (1 HSPs)
scaffold0141 (20-192)||(29775-29947)
[»] scaffold0611 (1 HSPs)
scaffold0611 (20-192)||(1841-2013)
[»] scaffold0163 (1 HSPs)
scaffold0163 (31-135)||(19402-19506)
[»] scaffold0059 (1 HSPs)
scaffold0059 (20-192)||(46695-46867)
[»] scaffold0058 (1 HSPs)
scaffold0058 (52-192)||(62651-62791)
[»] scaffold0010 (1 HSPs)
scaffold0010 (20-192)||(260360-260532)
[»] scaffold0142 (1 HSPs)
scaffold0142 (54-192)||(33183-33320)


Alignment Details
Target: scaffold0021 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 166769 - 166948
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| |||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| | |||||    
T  166769 atggtgttgtagaaa-aaaaaataagacattacaagaaatggcaagaactattttaaatgaatcaaatgttgaaaagtatttttgggcagaaaccataaa 166867  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| |||||    
T  166868 tacttcttgctatatcttaaacagagtttcaataagaaaagttttaaacaaaaccccatatgaactctggaaagggagaaa 166948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 129; Significance: 6e-67; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 11377287 - 11377467
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||| | ||| |    
T  11377287 atggtgttgtagaaagaaaaaataggacattacaagaaatggcaagaactattttaaatgaatcaaatgttaaaaagtatttttgggcagaatccatata 11377386  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||||| |||||||||||    
T  11377387 tacttcttgctatatcttaaacaaagtttcaataagaatttttttaaacaaaaccccgtatgaactctgtaaaggaagaaa 11377467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 8998337 - 8998517
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  8998337 atggagttgttgaaagaaaaaataggactttgcaagaaatggcaagaactattttaaatgaatcaaatgttgagaaatatttttgggcagaagccataaa 8998436  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||| |||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  8998437 tacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaagaaagaaa 8998517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 27747499 - 27747319
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||||||||||||||||| |||||||||||||||||| ||||| || |||||||| |||||||||||||| ||||||||||||||||| |||||    
T  27747499 atggtgttgtagaaagaaaaaataggacattacaagaaatggcaagaactatcttaaatgagtcaaatgttgaaaaatatttttgggcagaagccataaa 27747400  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    |||||||||  |||||||||||| |||||| ||||||||||||||  | ||||||| |||||||||||| |||||||||||    
T  27747399 tacttcttgtcatatcttaaacagagtttctataagaaaagtttttgataaaaccccgtatgaactctgaaaaggaagaaa 27747319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 9007506 - 9007678
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  9007506 atggagttgttgaaagaaaaaatagaactttgcaagaaatggcaagaactattttaaatgaatcaaatgttgagaaatatttttgggcagaagccataaa 9007605  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    ||| |||||||| || ||||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  9007606 tacatcttgctacattttaaatagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctagaaa 9007678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 18163957 - 18164129
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  18163957 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 18164056  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  18164057 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 18164129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 24928614 - 24928442
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  24928614 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 24928515  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  24928514 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 24928442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 31360711 - 31360883
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  31360711 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 31360810  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  31360811 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 31360883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 16901838 - 16902010
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  16901838 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 16901937  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | |||||||| |  |||||||||||||||    
T  16901938 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaacaccatatgaactctggaaa 16902010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 17946024 - 17946102
Alignment:
Q  122 cttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  17946024 cttcttgatatatcttaaacagagtttcaataagaaaagttttaaacaaaactctgtatgaactctagaaaggaagaaa 17946102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 25897985 - 25898157
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||   ||  ||||||||||||| ||||||||  | ||||||||||| |||||||| ||||||||||| ||||| || ||    
T  25897985 atggagttgttgaaagaaaaaatcgaactctacaagaaatggcaagaacaatgattaatgaatcaaacgttgaaaaatatttttgggctgaagccatcaa 25898084  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || |||||||||||| |||| | ||||||||| |||||| || | || |||||||  |||||||||||||||    
T  25898085 cacatcttgctatatcataaatagagtttcaattagaaaatttctcaataaaaccccatatgaactctggaaa 25898157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 29563224 - 29563297
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaa 93  Q
    |||| ||||| ||||| |||||||  || || ||||||||||| |||||||| |||||||||||||||||||||    
T  29563224 atggagttgttgaaaggaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaa 29563297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 25507859 - 25507679
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||||||||| ||||||| ||| || |||||||| || ||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  25507859 atggtgttgtagaaaggaaaaataggacgttgcaagaaattgcaagaactattttaaatgaatcaaatgttgaaaaatatttttgggcagaagaaataaa 25507760  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||| |||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25507759 tacctcttgctatatcttgaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaaggaagaaa 25507679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 19688288 - 19688468
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| || ||||||||||  || || ||||||||||| ||||| ||||||||||||||||||||||| || ||||| ||||||||||  |||||    
T  19688288 atggagttgttgatagaaaaaatagaactttgcaagaaatggcaagaactattttaaatgaatcaaatgttgagaaatatttgtgggcagaagtcataaa 19688387  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||| |||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  19688388 tacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaagaaagaaa 19688468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 28361178 - 28361006
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  ||| | ||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||| ||||| |||||    
T  28361178 atggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtagaaaaatacttttgggctgaagccataaa 28361079  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    |||||||||||||||| ||||||  |||||||| ||||||||||||||||||||||  || ||||||||||||    
T  28361078 tacttcttgctatatcataaacagggtttcaattagaaaagttttaaacaaaaccccatacgaactctggaaa 28361006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 8976738 - 8976910
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  8976738 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 8976837  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  8976838 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 8976910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 9541027 - 9541199
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  9541027 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 9541126  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  9541127 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 9541199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 16405501 - 16405673
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  16405501 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 16405600  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  16405601 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 16405673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 31 - 192
Target Start/End: Complemental strand, 40090145 - 40089984
Alignment:
Q  31 gaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgct 130  Q
    |||||||||||||  || |||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||    
T  40090145 gaaagaaaaaatagaactttacaagaaatggccagaaccatgttaaatgaatcaaatgttgaaaaatatttttgggctgaagcaataaacacatcttgct 40090046  T
Q  131 atatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    ||||| | ||    ||| | || |||||  || ||||||||||||  |||||||||||||||    
T  40090045 atatcctgaatcgtgttactatcagaaattttctaaacaaaaccccatatgaactctggaaa 40089984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 2158752 - 2158855
Alignment:
Q  31 gaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgct 130  Q
    |||||||||||||  || |||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||    
T  2158752 gaaagaaaaaatagaactttacaagaaatggccagaaccatgttaaatgaatcaaatgttgaaaaatatttttgggctgaagcaataaacacatcttgct 2158851  T
Q  131 atat 134  Q
    ||||    
T  2158852 atat 2158855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 6426204 - 6426371
Alignment:
Q  25 gttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatactt 124  Q
    ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || || || |    
T  6426204 gttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacat 6426303  T
Q  125 cttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    |||| || || || || | |||||| |||| ||| ||| | ||||||||||  |||||||||||||||    
T  6426304 cttgttacattttgaatagagtttctataaaaaaggttcttaacaaaaccccatatgaactctggaaa 6426371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 48982206 - 48982364
Alignment:
Q  34 agaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgctata 133  Q
    ||||||||||  ||| ||||||||||||| ||||||||  ||| |||||||||| | ||||| || |||||||| ||||| |||||||| ||||||||||    
T  48982206 agaaaaaatagaacactacaagaaatggcaagaacaatgataagtgaatcaaatatagaaaaatacttttgggctgaagccataaatacctcttgctata 48982305  T
Q  134 tcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    |  ||||    || || || |||||| |||||||||||||||  |||||||||||||||    
T  48982306 ttataaatcgtgtctctattagaaaaattttaaacaaaaccccatatgaactctggaaa 48982364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 4363502 - 4363417
Alignment:
Q  55 gaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgctatatcttaaa 140  Q
    |||||||| ||||||||  |||||||||||||||| ||||| ||||||| || |||||  ||||||||||||||||||||| ||||    
T  4363502 gaaatggcaagaacaatgataaatgaatcaaatgtagaaaaatatttttaggtagaagtcataaatacttcttgctatatcataaa 4363417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 16027244 - 16027196
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaac 68  Q
    |||| |||||||||||||||||||| || ||||| |||||||| |||||    
T  16027244 atggggttgtagaaagaaaaaataaaactttacaggaaatggcaagaac 16027196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 9e-60; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 45495723 - 45495543
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||||||||| |||||||  ||| ||||||||||||| ||||| ||||||||||||||||| || ||||| ||||||||||||||||| |||||    
T  45495723 atggtgttgtagaaaggaaaaatagaacactacaagaaatggcaagaactattttaaatgaatcaaacgtagaaaaatatttttgggcagaagccataaa 45495624  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  45495623 tacctcttgctatatcttgaacagagtttcaattagaaaagttttaaacaaaaccccgtatgaactctggaaaggaagaaa 45495543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 20747910 - 20748082
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  ||| | ||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||  || |  |||||    
T  20747910 atggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtagaaaaatacttttgggttgatggcataaa 20748009  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    |||||||||||||||| ||||||  |||||||| |||||| |||||||||||||||  |||||||||||||||    
T  20748010 tacttcttgctatatcataaacatggtttcaattagaaaatttttaaacaaaaccccatatgaactctggaaa 20748082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 200
Target Start/End: Original strand, 19754201 - 19754376
Alignment:
Q  25 gttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatactt 124  Q
    |||||||||||||||||||  || || ||||| ||| | ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| |||||||| |    
T  19754201 gttgtagaaagaaaaaatagaactttgcaagagatgacaagaactattttaaacgaatccaatgttgagaaatatttatgggcggaagccataaatacat 19754300  T
Q  125 cttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    |||||||||| ||||| | ||| |||||||||||||||||||||||||||| ||||||||| || |||| ||||||    
T  19754301 cttgctatattttaaatagagtctcaataagaaaagttttaaacaaaaccccgtatgaactttgaaaagaaagaaa 19754376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 21209419 - 21209247
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  21209419 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 21209320  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  21209319 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 21209247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 12919105 - 12919277
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||   || |||||||||||||| ||||||||  | |||||||||||||||||||| ||||||||||| ||||| || ||    
T  12919105 atggagttgttgaaagaaaaaatcgaactttacaagaaatggcaagaacaatgattaatgaatcaaatgttgaaaaatatttttgggctgaagctattaa 12919204  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     ||||||||||||||  ||||   ||||||||| |||||| || | ||||||||||  |||||||| ||||||    
T  12919205 cacttcttgctatattataaatcgagtttcaattagaaaaattctcaacaaaaccccttatgaactttggaaa 12919277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 14888138 - 14887966
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||| | || |||||||||||||| || ||    
T  14888138 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaagattacttttgggcagaagccattaa 14888039  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  14888038 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 14887966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 25047833 - 25047691
Alignment:
Q  50 tacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgctatatcttaaacaaagtttc 149  Q
    ||||||||||||| ||||||||  | |||||||||||||||||||| ||||||||||| ||||| || || || |||||||||||| |||| | ||| ||    
T  25047833 tacaagaaatggcaagaacaatgatcaatgaatcaaatgttgaaaaatatttttgggctgaagccatcaacacatcttgctatatcataaatagagtctc 25047734  T
Q  150 aataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    ||| |||||| || | ||||||||||  |||||||||||||||    
T  25047733 aattagaaaaattcttaacaaaaccccatatgaactctggaaa 25047691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 50 - 192
Target Start/End: Complemental strand, 33598354 - 33598212
Alignment:
Q  50 tacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgctatatcttaaacaaagtttc 149  Q
    ||||||||||||| ||||||||  | |||||||||||||||||||| ||||||||||| ||||| || || || ||||||||||| ||||| | ||||||    
T  33598354 tacaagaaatggcaagaacaatgattaatgaatcaaatgttgaaaaatatttttgggctgaagccattaacacatcttgctatattttaaatagagtttc 33598255  T
Q  150 aataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    ||| |||||| || | ||||||||||  ||||| |||||||||    
T  33598254 aatcagaaaaattctcaacaaaaccccttatgagctctggaaa 33598212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 18236218 - 18236390
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||   ||  ||||||||||||| ||||||||  | ||||||||||| |||||||| ||||||| ||| ||||| || ||    
T  18236218 atggagttgtcgaaagaaaaaatcgaactctacaagaaatggcaagaacaatgattaatgaatcaaacgttgaaaaatatttttaggctgaagccatcaa 18236317  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || |||||||||||| |||| | ||||||||| |||||| || | || |||||||  |||||||||||||||    
T  18236318 cacatcttgctatatcataaatagagtttcaattagaaaaattctcaataaaaccccatatgaactctggaaa 18236390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 18245669 - 18245841
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||   ||  ||||||||||||| ||||||||  | ||||||||||| |||||||| ||||||| ||| ||||| || ||    
T  18245669 atggagttgtcgaaagaaaaaatcgaactctacaagaaatggcaagaacaatgattaatgaatcaaacgttgaaaaatatttttaggctgaagccatcaa 18245768  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || |||||||||||| |||| | ||||||||| |||||| || | || |||||||  |||||||||||||||    
T  18245769 cacatcttgctatatcataaatagagtttcaattagaaaaattctcaataaaaccccatatgaactctggaaa 18245841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 22834630 - 22834802
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||| |||||||  || || ||||||||||| |||||||| |||||||||||||| ||| || | ||||||||||||||||| || ||    
T  22834630 atggagttgttgaaaggaaaaatagaaccttgcaagaaatggctagaacaatgttaaatgaatcaaacgttaaagattatttttgggcagaagccattaa 22834729  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || | ||| || || || || | ||||||||||||||| ||| | ||||||||||  |||||||||| ||||    
T  22834730 cacatattgttacattttgaatagagtttcaataagaaaggttcttaacaaaaccccatatgaactctagaaa 22834802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 9e-60; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 610223 - 610403
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  610223 atggagttgttgaaagaaaaaataggactttgcaagaaatggcaagaactattttaaatgaatcaaatgttgagaaatatttttgggcagaagccataaa 610322  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||| |||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  610323 tacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaagaaagaaa 610403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 15179025 - 15179180
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  ||| | ||||||||||| |||||||| ||||||||||||||||| || || || ||||||||  |||| |||||    
T  15179025 atggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtagagaaatacttttgggctaaagccataaa 15179124  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccc 175  Q
    |||||||||||||||| ||||||  |||||||| |||||| |||||||||||||||    
T  15179125 tacttcttgctatatcataaacagggtttcaattagaaaaattttaaacaaaaccc 15179180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 16138633 - 16138461
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  16138633 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 16138534  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     |||||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  16138533 cacttcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 16138461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 5388364 - 5388192
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  5388364 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 5388265  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  5388264 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 5388192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 6538369 - 6538541
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  6538369 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 6538468  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  6538469 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 6538541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 8504941 - 8505113
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  8504941 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 8505040  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  8505041 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 8505113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 9541689 - 9541517
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  9541689 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 9541590  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  9541589 cacatcttgttacattttgaatagagtttctataagaaatgttcttaacaaaaccccatatgaactctggaaa 9541517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 26354748 - 26354576
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  26354748 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 26354649  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  26354648 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 26354576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 32102272 - 32102444
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  32102272 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 32102371  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  32102372 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 32102444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 46501006 - 46501178
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  46501006 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 46501105  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  46501106 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 46501178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 44901248 - 44901421
Alignment:
Q  20 atggcgttgtagaaagaaaaaataaga-cattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataa 118  Q
    |||| ||||| |||||||||||  ||| | || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || |    
T  44901248 atggagttgttgaaagaaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccatta 44901347  T
Q  119 atacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    | || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  44901348 acacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 44901421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 14641267 - 14641095
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||| ||||||   || |||||||||||||| ||||||||  | |||||||||||||||||||| ||||||||||| ||||| || ||    
T  14641267 atggagttgttgaaaggaaaaatcgtactttacaagaaatggcaagaacaatgattaatgaatcaaatgttgaaaaatatttttgggctgaagctattaa 14641168  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     ||||||||||||||  ||||   |||||| || |||||| || | |||||||| |  |||||||||||||||    
T  14641167 cacttcttgctatattataaatcgagtttctattagaaaaattctcaacaaaactccttatgaactctggaaa 14641095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 9e-60; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 724993 - 724813
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  724993 atggagttgttgaaagaaaaaataggactttgcaagaaatggcaagaactattttaaatgaatcaaatgttgagaaatatttttgggcagaagccataaa 724894  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||| |||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  724893 tacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaagaaagaaa 724813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 15327282 - 15327102
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||||||||| |||||||  ||| ||||||||||||| ||||| || |||||||||||||| || ||||| ||||||||||||||||| |||||    
T  15327282 atggtgttgtagaaaggaaaaatagaacactacaagaaatggcaagaactatcttaaatgaatcaaacgtagaaaaatatttttgggcagaagccataaa 15327183  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  15327182 tacctcttgctatatcttgaacagagtttcaattagaaaagttttaaacaaaaccccgtatgaactctggaaaggaagaaa 15327102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 18711487 - 18711667
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||||||||| |||||||  ||| | ||||||||||| ||||| || |||||||||||||| || ||||| ||||||||||||||||| |||||    
T  18711487 atggtgttgtagaaaggaaaaatagaacactgcaagaaatggcaagaactatcttaaatgaatcaaacgtagaaaaatatttttgggcagaagccataaa 18711586  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||| |||||||||||||| |||| ||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||    
T  18711587 tacctcttgctatatcttgaacagagtttcaattagaaaagttttaaacaaaaccccgtatgaactttggaaaggaagaaa 18711667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 30451089 - 30450917
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  ||| | ||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||| ||||| |||||    
T  30451089 atggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtagaaaaatacttttgggctgaagccataaa 30450990  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    ||||||||| |||||| ||||||  |||||||| ||||||||||||||||||||||  || ||||||||||||    
T  30450989 tacttcttgttatatcataaacagggtttcaattagaaaagttttaaacaaaaccccatacgaactctggaaa 30450917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 24416118 - 24416271
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  ||| | ||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||| ||||| |||||    
T  24416118 atggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtagaaaaatacttttgggctgaagccataaa 24416217  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaac 173  Q
    |||||||||||||||| ||||||  |||||||| ||||||||||||||||||||    
T  24416218 tacttcttgctatatcataaacagggtttcaattagaaaagttttaaacaaaac 24416271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 20951753 - 20951925
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || |||||||||||||| ||||| || ||||||||||||||||||||| | ||||||||||||||||| || ||    
T  20951753 atggagttgttgaaagaaaaaatagaactttacaagaaatggctagaaccatgttaaatgaatcaaatgttgaagattatttttgggcagaagccattaa 20951852  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || |||||||| || || || | ||||||||||||||| ||| | || |||||||  |||||||||||||||    
T  20951853 cacatcttgctacattttgaatagagtttcaataagaaaggttctcaataaaaccccatatgaactctggaaa 20951925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 26198774 - 26198602
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  26198774 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 26198675  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  26198674 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 26198602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 27416040 - 27416212
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  27416040 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 27416139  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  27416140 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 27416212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 33943212 - 33943384
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  33943212 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 33943311  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  33943312 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 33943384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 188
Target Start/End: Original strand, 18383632 - 18383800
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  18383632 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 18383731  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctg 188  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||    
T  18383732 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctg 18383800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 5604103 - 5604261
Alignment:
Q  34 agaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgctata 133  Q
    ||||||||||  ||| ||||||||||||| ||||||||  |||||||||||||||| ||||| || |||||||| ||||| |||||||| ||||||||||    
T  5604103 agaaaaaatagaacactacaagaaatggcaagaacaatgataaatgaatcaaatgtagaaaaatacttttgggctgaagccataaatacctcttgctata 5604202  T
Q  134 tcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    |  ||||    || || || |||||| |||||||||||||||  |||||||||||||||    
T  5604203 ttataaatcgtgtctctattagaaaaattttaaacaaaaccccatatgaactctggaaa 5604261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 24297068 - 24296896
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||   ||  ||||||||||||| ||||||||  | ||||||||||| |||||||| ||||||| ||| ||||| || ||    
T  24297068 atggagttgtcgaaagaaaaaatcgaactctacaagaaatggcaagaacaatgattaatgaatcaaacgttgaaaaatatttttaggctgaagccatcaa 24296969  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || |||||||||||| |||| | ||||||||| |||||| || | || |||||||  |||||||||||||||    
T  24296968 cacatcttgctatatcataaatagagtttcaattagaaaaattctcaataaaaccccatatgaactctggaaa 24296896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 19382228 - 19382056
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||| |||||||  || || ||||||||||| |||||||| ||||||||||||||||||||| | || |||| ||| ||||| || ||    
T  19382228 atggagttgttgaaaggaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaagattacttttcggcggaagccattaa 19382129  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    ||| ||||| || || || || | |||||||||||||||  || | |||||||| |  |||||||||||||||    
T  19382128 tacatcttgttacattttgaatagagtttcaataagaaagattcttaacaaaactccatatgaactctggaaa 19382056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 22454328 - 22454156
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||   ||  ||||||||| ||| ||||||||  | |||||||||||||| ||||| ||||||| ||| ||||| || ||    
T  22454328 atggagttgttgaaagaaaaaattgaactctacaagaaagggcaagaacaatgattaatgaatcaaatgtggaaaaatattttttggctgaagccattaa 22454229  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||||||||| |||||   ||||||||| |||||| || | ||||||||||  ||||| |||||||||    
T  22454228 cacatcttgctatattttaaatcgagtttcaatcagaaaaattctcaacaaaaccccttatgagctctggaaa 22454156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 115639 - 115819
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  115639 atggagttgttgaaagaaaaaataggactttgcaagaaatggcaagaactattttaaatgaatcaaatgttgagaaatatttttgggcagaagccataaa 115738  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||| |||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  115739 tacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaagaaagaaa 115819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 14935789 - 14935969
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||||||||| |||||||  ||| ||||||||||||| ||||| |||||||||||||||||  | ||||| ||||||||||||||||  |||||    
T  14935789 atggtgttgtagaaaggaaaaatagaacactacaagaaatggcaagaactattttaaatgaatcaaacatagaaaaatatttttgggcagaaggcataaa 14935888  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||| |||||||||||||| |||| ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||    
T  14935889 tacctcttgctatatcttgaacagagtttcaattagaaaagttttaaaaaaaaccccgtatgaactctggaaaggaagaaa 14935969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 26815780 - 26815952
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  ||| | ||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||| ||||| |||||    
T  26815780 atggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtagaaaaatacttttgggctgaagccataaa 26815879  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    |||||||||||||||| ||||||  |||||||| ||||||||||||||||||||||  || ||||||||||||    
T  26815880 tacttcttgctatatcataaacatggtttcaattagaaaagttttaaacaaaaccccatacgaactctggaaa 26815952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 54696273 - 54696101
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  ||| | ||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||| ||||| |||||    
T  54696273 atggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtagaaaaatacttttgggctgaagccataaa 54696174  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    |||||||||||||||| ||||||  |||||||| |||||| |||||||||||||||  || ||||||||||||    
T  54696173 tacttcttgctatatcataaacagggtttcaattagaaaaattttaaacaaaaccccatacgaactctggaaa 54696101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 6696110 - 6696282
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  6696110 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 6696209  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  6696210 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 6696282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 17155308 - 17155480
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||| | || |||||||||||||| || ||    
T  17155308 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaagattacttttgggcagaagccattaa 17155407  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | ||||||||||||||| ||| | ||||||||||  |||||||||||||||    
T  17155408 cacatcttgttacattttgaatagagtttcaataagaaaggttcttaacaaaaccccatatgaactctggaaa 17155480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 16268948 - 16269120
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||| |  || || ||||||||||| |||||||| ||||||||||||||||||||| | || |||||||||||||| || ||    
T  16268948 atggagttgttgaaagaaaaaacagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaagattacttttgggcagaagccattaa 16269047  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||| ||  |||||||| ||||||    
T  16269048 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaatcccatatgaactttggaaa 16269120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 18127398 - 18127313
Alignment:
Q  55 gaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgctatatcttaaa 140  Q
    |||||||| ||||||||  |||||||||||||||| ||||| ||||||| || |||||  ||||||||||||||||||||| ||||    
T  18127398 gaaatggcaagaacaatgataaatgaatcaaatgtagaaaaatatttttaggtagaagtcataaatacttcttgctatatcataaa 18127313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 52506 - 52686
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||  |||||    
T  52506 atggagttgttgaaagaaaaaataggactttgcaagaaatggcaagaactattttaaatgaatcaaatgttgagaaatatttttgggcagaagacataaa 52605  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    ||| |||||||| || ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  52606 tacatcttgctacattttaaacagagtttcaataagaaaagttttaaacaaaaccccgtatgaactctggaaagaaagaaa 52686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 18479 - 18659
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||||  ||||    
T  18479 atggtgttgtagaaagaaaaaataggacattataagaaatggcaagaactattttaaatgagtcaaatgttgaaaaatatttttgggcagaagccgtaaa 18578  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    |||||||||  |||||||||||| ||||||||||||||   |||| || ||||||| ||||||||||||||||||||||||    
T  18579 tacttcttgtcatatcttaaacatagtttcaataagaattttttttaataaaaccccgtatgaactctggaaaggaagaaa 18659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 85037 - 84865
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||| ||| | ||||||||||||||||| || ||    
T  85037 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgtagaagattatttttgggcagaagccattaa 84938  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | ||||||||||||||  ||| | ||||||| ||  |||||||||||||||    
T  84937 cacatcttgttacattttgaatagagtttcaataagaacggttcttaacaaaatcccatatgaactctggaaa 84865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 8e-54; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 26 - 200
Target Start/End: Original strand, 24992550 - 24992724
Alignment:
Q  26 ttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttc 125  Q
    |||| |||||||||||||  || || ||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||||| ||    
T  24992550 ttgttgaaagaaaaaatagaactttgcaagaaatggcaagaactattttaaatgaatcaaatgttgagaaatatttttgggcagaagccataaatacatc 24992649  T
Q  126 ttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaaggaagaaa 200  Q
    |||||| || ||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||    
T  24992650 ttgctacattttaaacagagtttcaataagaaaatttttaaacaaaaccccgtatgaactctggaaagaaagaaa 24992724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 27166429 - 27166257
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || |||||||||||||| ||||| || ||||||||||||||||||||| | ||||||||||||||||| || ||    
T  27166429 atggagttgttgaaagaaaaaatagaactttacaagaaatggctagaaccatgttaaatgaatcaaatgttgaagattatttttgggcagaagccattaa 27166330  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || |||||||| || || || | ||||||||||||||| ||| | || |||||||  |||||||||||||||    
T  27166329 cacatcttgctacattttgaatagagtttcaataagaaaggttcttaataaaaccccatatgaactctggaaa 27166257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 9510213 - 9510041
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  9510213 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 9510114  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  9510113 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 9510041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 18655110 - 18655282
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  18655110 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 18655209  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  18655210 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 18655282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 45018242 - 45018414
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  45018242 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 45018341  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  45018342 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 45018414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 22906037 - 22906175
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || |||||||||||||| ||||| || ||||||||||||||||||||| | ||||||||||||||||| || ||    
T  22906037 atggagttgttgaaagaaaaaatagaactttacaagaaatggctagaaccatgttaaatgaatcaaatgttgaagattatttttgggcagaagccattaa 22906136  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaa 158  Q
     || |||||||| || || || | ||||| |||||||||    
T  22906137 cacatcttgctacattttgaatagagttttaataagaaa 22906175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 34 - 192
Target Start/End: Original strand, 1794488 - 1794646
Alignment:
Q  34 agaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgctata 133  Q
    ||||||||||  ||| ||||||||||||| ||||||||  ||| |||||||||| | ||||| || |||||||| ||||| |||||||| ||||||||||    
T  1794488 agaaaaaatagaacactacaagaaatggcaagaacaatgataagtgaatcaaatatagaaaaatacttttgggctgaagccataaatacctcttgctata 1794587  T
Q  134 tcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    |  ||||    || || || |||||| |||||||||||||||  |||||||||||||||    
T  1794588 ttataaatcgtgtctctattagaaaaattttaaacaaaaccccatatgaactctggaaa 1794646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 22102426 - 22102589
Alignment:
Q  25 gttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatactt 124  Q
    ||||| |||||||||||||  |  || |||||||||||  ||||||| |||||| ||||||| |||||| | || |||||| || |||| || ||||| |    
T  22102426 gttgttgaaagaaaaaatagaattttgcaagaaatggcttgaacaatgttaaattaatcaaacgttgaagattacttttggtcaaaagccattaatacat 22102525  T
Q  125 cttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctg 188  Q
    |||| ||||| || || |||||||||||||||||| |  |||| ||||||   |||||||||||    
T  22102526 cttgttatattttgaataaagtttcaataagaaaaatactaaataaaacctcatatgaactctg 22102589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 134
Target Start/End: Complemental strand, 15826125 - 15826022
Alignment:
Q  31 gaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgct 130  Q
    |||||||||||||  || || ||||||||| | |||||||| || |||||||| |||||| |||| ||||||||||  ||||| ||||| || | |||||    
T  15826125 gaaagaaaaaatagaactttgcaagaaatgacaagaacaatattgaatgaatctaatgttaaaaaatatttttgggttgaagccataaacacattttgct 15826026  T
Q  131 atat 134  Q
    ||||    
T  15826025 atat 15826022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 13945371 - 13945445
Alignment:
Q  84 aaatgttgaaaagtatttttgggcagaagcaataaatacttcttgctatatcttaaacaaagtttcaataagaaa 158  Q
    |||| ||||||| |||||||||||||||   || || |||||||||||||| || |||||||| || ||||||||    
T  13945371 aaatattgaaaaatatttttgggcagaaagcatcaacacttcttgctatattttgaacaaagtgtcgataagaaa 13945445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 158
Target Start/End: Original strand, 14086560 - 14086634
Alignment:
Q  84 aaatgttgaaaagtatttttgggcagaagcaataaatacttcttgctatatcttaaacaaagtttcaataagaaa 158  Q
    |||| ||||||| |||||||||||||||   || || |||||||||||||| || |||||||| || ||||||||    
T  14086560 aaatattgaaaaatatttttgggcagaaagcatcaacacttcttgctatattttgaacaaagtgtcgataagaaa 14086634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 9434 - 9606
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  9434 atggagttgttgaaagaaaaaatagaactttgcaagaaatggcaagaactattttaaatgaatcaaatgttgagaaatatttttgggcagaagccataaa 9533  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    ||| |||||||| || | ||| | ||||| |||||||||||||||||| ||||||| |||| |||||||||||    
T  9534 tacatcttgctacatttaaaatagagtttaaataagaaaagttttaaataaaaccccgtatcaactctggaaa 9606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 100787 - 100615
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  ||| | ||||||||||| |||||||| ||||||||||||||||| ||||| || |||||||| ||||| |||||    
T  100787 atggagttgttgaaagaaaaaatagaacactccaagaaatggcaagaacaatgttaaatgaatcaaatgtagaaaaatacttttgggctgaagccataaa 100688  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    |||||||||||||||| ||||||  |||||||| |||||| |||||||||||||||  || ||||||||||||    
T  100687 tacttcttgctatatcataaacagggtttcaattagaaaaattttaaacaaaaccccatacgaactctggaaa 100615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 122
Target Start/End: Original strand, 85312 - 85414
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||    
T  85312 atggagttgttgaaagaaaaaataggactttgcaagaaatggcaagaactattttaaatgaatcaaatgttgagaaatatttttgggcagaagccataaa 85411  T
Q  120 tac 122  Q
    |||    
T  85412 tac 85414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0313 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0313
Description:

Target: scaffold0313; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 13449 - 13621
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || |||||||||||||| ||||| || ||||||||||||||||||||| | ||||||||||||||||| || ||    
T  13449 atggagttgttgaaagaaaaaatagaactttacaagaaatggctagaaccatgttaaatgaatcaaatgttgaagattatttttgggcagaagccattaa 13548  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | ||||||||||||||| ||| | || |||||||  |||||||||||||||    
T  13549 cacatcttgttacattttgaatagagtttcaataagaaaggttctcaataaaaccccatatgaactctggaaa 13621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 14428 - 14256
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  14428 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 14329  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  14328 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 14256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 148917 - 149077
Alignment:
Q  32 aaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgcta 131  Q
    ||||||||||||  || |||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||||| || || || ||||||||    
T  148917 aaagaaaaaatagaactttacaagaaatggctagaaccatgttaaatgaatcaaatgttgaaaattatttttgggcagaagccattaacacatcttgcta 149016  T
Q  132 tatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || || || |||||||| |||||||| ||| | || |||||||  |||||||| ||||||    
T  149017 cattttgaataaagtttctataagaaaggttcttaataaaaccccatatgaactatggaaa 149077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 14278545 - 14278373
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||   || |||||||||||||| ||||||||  | |||||||||||||||||||| ||||||||||| ||||| || ||    
T  14278545 atggagttgttgaaagaaaaaatcgaactttacaagaaatggcaagaacaatgattaatgaatcaaatgttgaaaaatatttttgggctgaagctattaa 14278446  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     ||||||||||||||  ||||   ||||||||| |||||| || | ||||||||||  |||||||||||||||    
T  14278445 cacttcttgctatattataaatcgagtttcaatcagaaaaattctcaacaaaaccccctatgaactctggaaa 14278373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 16158775 - 16158947
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || || ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || ||    
T  16158775 atggagttgttgaaagaaaaaatagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaa 16158874  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  16158875 cacatcttgttacattttgaatagagtttctataagaaaggttcttaacaaaaccccatatgaactctggaaa 16158947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 134
Target Start/End: Original strand, 20174847 - 20174950
Alignment:
Q  31 gaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgct 130  Q
    |||||||||||||  || |||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||||    
T  20174847 gaaagaaaaaatagaactttacaagaaatggccagaaccatgttaaatgaatcaaatgttgaaaaatatttttgggctgaagcaataaacacatcttgct 20174946  T
Q  131 atat 134  Q
    ||||    
T  20174947 atat 20174950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 29775 - 29947
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||| ||| || ||||||||||| |||||||| ||||||||||||||||| ||| | ||||||||||||||||| || ||    
T  29775 atggagttgttgaaagaaaaaataggactttgcaagaaatggctagaacaatgttaaatgaatcaaatgtagaagattatttttgggcagaagccattaa 29874  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | ||||||||||||||  ||| | ||||||| ||  |||||||||||||||    
T  29875 cacatcttgttacattttgaatagagtttcaataagaacggttcttaacaaaatcccatatgaactctggaaa 29947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0611 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0611
Description:

Target: scaffold0611; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 1841 - 2013
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||| |  || || ||||||||||| |||||||| ||||||||||||||||||||| | || |||||||||||||| || ||    
T  1841 atggagttgttgaaagaaaaaacagaaccttgcaagaaatggcaagaacaatgttaaatgaatcaaatgttgaagattacttttgggcagaagccattaa 1940  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||| || || || || | |||||| |||||||| ||| | ||||||||||  |||||||||||||||    
T  1941 cacatcttgttacattttgaatagagtttctataagaaaggttattaacaaaaccccatatgaactctggaaa 2013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 135
Target Start/End: Original strand, 19402 - 19506
Alignment:
Q  31 gaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgct 130  Q
    |||||||||||||  || |||||||||||||| ||||| || ||||||||||||||||||||||| ||||||||||| |||||||| || || |||||||    
T  19402 gaaagaaaaaatagaactttacaagaaatggccagaaccatgttaaatgaatcaaatgttgaaaaatatttttgggctgaagcaattaacacatcttgct 19501  T
Q  131 atatc 135  Q
    |||||    
T  19502 atatc 19506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 46867 - 46695
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| |||||||||||||  || |||||||||||||| | |||||| ||||||||||||| ||||||||| ||||||||||||||||| |||||    
T  46867 atggagttgttgaaagaaaaaatagaactttacaagaaatggctaaaacaatgttaaatgaatcaattgttgaaaattatttttgggcagaagccataaa 46768  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     || ||||  || || || || | ||||||||||||||| ||| | || |||||||  | |||||| ||||||    
T  46767 cacatcttattacattttgaatagagtttcaataagaaaggttcttaataaaaccccatgtgaactttggaaa 46695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 52 - 192
Target Start/End: Complemental strand, 62791 - 62651
Alignment:
Q  52 caagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgctatatcttaaacaaagtttcaa 151  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||| || || || ||||| || || || || | |||||| |    
T  62791 caagaaatggctagaacaatgttaaatgaatcaaatgttgaaaattacttttgggcagaagccattaacacatcttgttacattttgaatagagtttcta 62692  T
Q  152 taagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    ||||||| ||| | ||||||||||| |||||||||| ||||    
T  62691 taagaaaggttcttaacaaaaccctatatgaactctagaaa 62651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 260360 - 260532
Alignment:
Q  20 atggcgttgtagaaagaaaaaataagacattacaagaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaa 119  Q
    |||| ||||| ||||||||||||   ||  ||||||||||||| ||||||||  | ||||||||||| |||||||| ||||||||||| ||||| || ||    
T  260360 atggagttgttgaaagaaaaaatcgaactctacaagaaatggcaagaacaatgattaatgaatcaaacgttgaaaaatatttttgggctgaagccatcaa 260459  T
Q  120 tacttcttgctatatcttaaacaaagtttcaataagaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
     |  |||||||||||| |||| | ||||||||| |||||| || | ||||||||||  |||||||||||||||    
T  260460 catatcttgctatatcataaatagagtttcaattagaaaaattctcaacaaaaccccatatgaactctggaaa 260532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 192
Target Start/End: Complemental strand, 33320 - 33183
Alignment:
Q  54 agaaatggcgagaacaattttaaatgaatcaaatgttgaaaagtatttttgggcagaagcaataaatacttcttgctatatcttaaacaaagtttcaata 153  Q
    ||||||| | || ||||| |||||||||| |||||||||| | | ||||||||||||||| || ||||| ||||| || || ||||| | ||||||||||    
T  33320 agaaatgtctaggacaatgttaaatgaattaaatgttgaagattgtttttgggcagaagccattaatacatcttgttacattttaaatagagtttcaata 33221  T
Q  154 agaaaagttttaaacaaaaccctgtatgaactctggaaa 192  Q
    ||||||||| | ||||||||||  |||| ||||||||||    
T  33220 agaaaagttcttaacaaaaccc-atatgtactctggaaa 33183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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