View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18751_high_13 (Length: 252)

Name: NF18751_high_13
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18751_high_13
NF18751_high_13
[»] chr6 (5 HSPs)
chr6 (16-246)||(25326920-25327150)
chr6 (16-246)||(26159455-26159685)
chr6 (16-246)||(26170752-26170982)
chr6 (181-247)||(6163545-6163611)
chr6 (167-213)||(2676016-2676062)
[»] chr8 (6 HSPs)
chr8 (163-246)||(45524884-45524967)
chr8 (175-245)||(38091440-38091510)
chr8 (17-159)||(20484301-20484443)
chr8 (175-246)||(24683660-24683731)
chr8 (169-246)||(9953683-9953760)
chr8 (169-246)||(28485393-28485472)
[»] chr4 (13 HSPs)
chr4 (17-159)||(17385730-17385872)
chr4 (175-243)||(37586486-37586554)
chr4 (175-246)||(5994888-5994959)
chr4 (175-246)||(16318887-16318958)
chr4 (169-240)||(32949646-32949717)
chr4 (175-246)||(27654566-27654637)
chr4 (175-246)||(51904636-51904707)
chr4 (175-213)||(37586585-37586623)
chr4 (176-245)||(19677344-19677413)
chr4 (169-214)||(28304030-28304075)
chr4 (192-241)||(32846185-32846234)
chr4 (193-246)||(40661963-40662016)
chr4 (179-244)||(56328769-56328834)
[»] chr2 (12 HSPs)
chr2 (162-245)||(42669735-42669820)
chr2 (175-245)||(19193523-19193593)
chr2 (175-246)||(18949215-18949286)
chr2 (169-242)||(37078053-37078126)
chr2 (175-224)||(6420475-6420524)
chr2 (187-246)||(4024778-4024837)
chr2 (176-219)||(4430134-4430177)
chr2 (183-246)||(19953484-19953547)
chr2 (175-246)||(30706358-30706429)
chr2 (175-247)||(31859120-31859192)
chr2 (175-223)||(35523456-35523504)
chr2 (167-207)||(42579782-42579822)
[»] chr7 (10 HSPs)
chr7 (169-241)||(25003454-25003526)
chr7 (180-242)||(46994388-46994450)
chr7 (175-246)||(2911850-2911921)
chr7 (175-246)||(20954768-20954839)
chr7 (187-246)||(24845462-24845521)
chr7 (187-242)||(44350248-44350303)
chr7 (182-246)||(23434784-23434848)
chr7 (97-144)||(5884492-5884539)
chr7 (169-221)||(25590751-25590803)
chr7 (176-244)||(4090000-4090068)
[»] chr5 (6 HSPs)
chr5 (175-246)||(41034450-41034521)
chr5 (17-159)||(27709393-27709535)
chr5 (175-243)||(25002026-25002094)
chr5 (175-224)||(36325548-36325597)
chr5 (187-242)||(5630587-5630642)
chr5 (163-213)||(41034549-41034599)
[»] chr3 (14 HSPs)
chr3 (177-240)||(44911627-44911690)
chr3 (175-246)||(10798297-10798368)
chr3 (167-240)||(7791923-7791996)
chr3 (162-247)||(11832111-11832196)
chr3 (172-239)||(214130-214197)
chr3 (187-242)||(21175584-21175639)
chr3 (175-246)||(53655427-53655498)
chr3 (176-246)||(34706603-34706673)
chr3 (179-224)||(48490870-48490915)
chr3 (158-213)||(53655526-53655582)
chr3 (187-246)||(46205564-46205623)
chr3 (190-245)||(52223490-52223545)
chr3 (172-246)||(8475243-8475317)
chr3 (162-214)||(55452023-55452075)
[»] chr1 (8 HSPs)
chr1 (175-246)||(18473738-18473809)
chr1 (169-246)||(25010082-25010158)
chr1 (187-239)||(7549682-7549734)
chr1 (187-246)||(11247859-11247918)
chr1 (50-159)||(51512103-51512212)
chr1 (175-220)||(40125863-40125908)
chr1 (197-245)||(33234496-33234544)
chr1 (167-214)||(29673595-29673642)
[»] scaffold0543 (1 HSPs)
scaffold0543 (167-207)||(9679-9719)
[»] scaffold0492 (1 HSPs)
scaffold0492 (167-207)||(11225-11265)
[»] scaffold0005 (1 HSPs)
scaffold0005 (175-246)||(296925-296996)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 25327150 - 25326920
Alignment:
Q  16 tagggttgcatgtaagtttgtttagagttttattagtaggttggctacttacaagaagtgtacagaagttgttggcatatgttctaaagcaatggtaaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  25327150 tagggttgcatgtaagtttgtttagagttttattagtaggttggctacttacaagaagtgtacagaagttgttggcatatgttctaaagcaatagtaaca 25327051  T
Q  116 tttgatgtagtaactaggtagaactctaccaatattatattgaatatgagaaatgctagcaacactctctccaacactcactttttaattggcttaaatt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  25327050 tttgatgtagtaactaggtagaactctaccaatattatattgaatatgagaaatgctagcaatactctctccaacactcactttttaattagcttaaatt 25326951  T
Q  216 atggtgggtttcatactttggaaatgggttc 246  Q
    |||||||||||   |||||||||||||||||    
T  25326950 atggtgggttttgcactttggaaatgggttc 25326920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 246
Target Start/End: Complemental strand, 26159685 - 26159455
Alignment:
Q  16 tagggttgcatgtaagtttgtttagagttttattagtaggttggctacttacaagaagtgtacagaagttgttggcatatgttctaaagcaatggtaaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  26159685 tagggttgcatgtaagtttgtttagagttttattagtaggttggctacttacaagaagtgtacagaagttgttggcatatgttctaaagcaatagtaaca 26159586  T
Q  116 tttgatgtagtaactaggtagaactctaccaatattatattgaatatgagaaatgctagcaacactctctccaacactcactttttaattggcttaaatt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  26159585 tttgatgtagtaactaggtagaactctaccaatattatattgaatatgagaaatgctagcaatactctctccaacactcactttttaattagcttaaatt 26159486  T
Q  216 atggtgggtttcatactttggaaatgggttc 246  Q
    |||||||||||   |||||||||||||||||    
T  26159485 atggtgggttttgcactttggaaatgggttc 26159455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 246
Target Start/End: Original strand, 26170752 - 26170982
Alignment:
Q  16 tagggttgcatgtaagtttgtttagagttttattagtaggttggctacttacaagaagtgtacagaagttgttggcatatgttctaaagcaatggtaaca 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26170752 tagggttgcatgtaagtttgtttagagttttattagtaggttgactacttacaagaattgtacagaagttgttggcatatgttctaaagcaatggtaaca 26170851  T
Q  116 tttgatgtagtaactaggtagaactctaccaatattatattgaatatgagaaatgctagcaacactctctccaacactcactttttaattggcttaaatt 215  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||    
T  26170852 tttgatgcagtaactaggtagaactctaccaatattatattgaatatgagaaatgttagcaacactctctccaacactcactttttaactgacttaaatt 26170951  T
Q  216 atggtgggtttcatactttggaaatgggttc 246  Q
    ||||||||||||| |||||||||||||||||    
T  26170952 atggtgggtttcacactttggaaatgggttc 26170982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 247
Target Start/End: Original strand, 6163545 - 6163611
Alignment:
Q  181 tctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttct 247  Q
    |||||| ||||||||||||||||||||||||||| || ||| || ||| |||||||||||| |||||    
T  6163545 tctctctaacactcactttttaattggcttaaatcatagtgcgtctcacactttggaaatgagttct 6163611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 213
Target Start/End: Complemental strand, 2676062 - 2676016
Alignment:
Q  167 aatgctagcaacactctctccaacactcactttttaattggcttaaa 213  Q
    |||||||||||||||||||| || ||||||||||| ||||| |||||    
T  2676062 aatgctagcaacactctctctaatactcacttttttattggtttaaa 2676016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 163 - 246
Target Start/End: Original strand, 45524884 - 45524967
Alignment:
Q  163 gagaaatgctagcaacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  45524884 gagaaatgctagcaacactctctccaacactcactttttaattggcttaaatcatggtgggtttcacactttggaaatgggttc 45524967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 38091510 - 38091440
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggtt 245  Q
    ||||||||||||||||||||||||| |||||||||||||| ||| | ||| ||||||||||||||||||||    
T  38091510 caacactctctccaacactcactttctaattggcttaaatcatgataggtctcatactttggaaatgggtt 38091440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 159
Target Start/End: Original strand, 20484301 - 20484443
Alignment:
Q  17 agggttgcatgtaagtttgtttagagttttattagtaggttggctacttacaagaagtgtacagaagttgttggcatatgttctaaagcaatggtaacat 116  Q
    |||| ||| |||||||||||  |||||| |   ||||||||||| |||| |||||||||| ||||   ||| ||  |||||||||||||||||| ||||     
T  20484301 agggctgcgtgtaagtttgtcaagagttctccaagtaggttggccactttcaagaagtgtgcagattatgtgggtgtatgttctaaagcaatgggaacac 20484400  T
Q  117 ttgatgtagtaactaggtagaactctaccaatattatattgaa 159  Q
    |||||||||||||||||| ||| |||||| || |||| |||||    
T  20484401 ttgatgtagtaactaggtggaattctacctatcttatgttgaa 20484443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 24683731 - 24683660
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||| ||||||||||||||||| | |||||||||||| ||| ||||| ||| | |||||||||||||||    
T  24683731 caacactatctccaacactcactttctgattggcttaaatcatgatgggtctcacattttggaaatgggttc 24683660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 9953683 - 9953760
Alignment:
Q  169 tgctagcaacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||| ||||||| |||| |||||||||||||| ||||| |||||| | ||||  | ||| |||||||||||| ||||    
T  9953683 tgctaacaacactatctcaaacactcacttttttattggtttaaatcaaggtgaatctcacactttggaaatgagttc 9953760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 246
Target Start/End: Original strand, 28485393 - 28485472
Alignment:
Q  169 tgctagcaacactctctc--caacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    |||||||||||||||||   ||||||| ||||  | ||||| ||||||||  |||||| ||| |||||||||||||||||    
T  28485393 tgctagcaacactctcttttcaacactaacttcctcattggtttaaattaatgtgggtctcacactttggaaatgggttc 28485472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 17385872 - 17385730
Alignment:
Q  17 agggttgcatgtaagtttgtttagagttttattagtaggttggctacttacaagaagtgtacagaagttgttggcatatgttctaaagcaatggtaacat 116  Q
    |||| |||||||||||||||  |||||| |   |||||||||||||||| |||||||||| ||||   ||| ||  |||||||||||||||||||||||     
T  17385872 agggctgcatgtaagtttgtcaagagttctccaagtaggttggctactttcaagaagtgtgcagattctgtaggtgtatgttctaaagcaatggtaacac 17385773  T
Q  117 ttgatgtagtaactaggtagaactctaccaatattatattgaa 159  Q
    |||||||||||||||||| ||| |||||| || |||| |||||    
T  17385772 ttgatgtagtaactaggtggaattctacctatcttatgttgaa 17385730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 37586486 - 37586554
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatggg 243  Q
    ||||||||||||||||||||||||| ||||| |||||||| ||||||||| ||| |||||| |||||||    
T  37586486 caacactctctccaacactcactttctaattagcttaaatcatggtgggtctcacactttgaaaatggg 37586554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 5994888 - 5994959
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||||||||||||| ||||||| |||||| ||||||| ||||||||| ||| || ||||||||||||||    
T  5994888 caacactctctccaacattcactttctaattgacttaaatcatggtgggtctcacacattggaaatgggttc 5994959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 16318958 - 16318887
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||||| ||||||| ||||||| |||||||||||||| ||| || || ||| ||||||||||| |||||    
T  16318958 caacactctttccaacaatcactttctaattggcttaaatcatgatgagtctcacactttggaaattggttc 16318887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 32949717 - 32949646
Alignment:
Q  169 tgctagcaacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaat 240  Q
    ||||||||||||||||| |||  |||| ||| |||||||||||||| ||||||||| | | |||||||||||    
T  32949717 tgctagcaacactctctacaatgctcattttctaattggcttaaatcatggtgggtcttacactttggaaat 32949646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 27654637 - 27654566
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    |||||||||||| |||||||| ||| | ||||| |||||| | ||||| ||||| || ||||||||||||||    
T  27654637 caacactctctcaaacactcaatttattattggtttaaatcaaggtggatttcacacgttggaaatgggttc 27654566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 51904636 - 51904707
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    |||||||||||| |||||| || || | |||||||||||| ||||||||| ||| |||||| |||| |||||    
T  51904636 caacactctctctaacacttacattcttattggcttaaatcatggtgggtctcacactttgtaaataggttc 51904707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 37586623 - 37586585
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaa 213  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  37586623 caacactctattcaacactcactttttaattggcttaaa 37586585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 176 - 245
Target Start/End: Complemental strand, 19677413 - 19677344
Alignment:
Q  176 aacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggtt 245  Q
    |||| ||||||||||||||||||| ||||||| |||||| || || | | ||| |||||| |||||||||    
T  19677413 aacaatctctccaacactcactttctaattggtttaaatcatagtagatctcacactttgaaaatgggtt 19677344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 169 - 214
Target Start/End: Original strand, 28304030 - 28304075
Alignment:
Q  169 tgctagcaacactctctccaacactcactttttaattggcttaaat 214  Q
    |||||||||||||||||| ||||| |||||||| |||| |||||||    
T  28304030 tgctagcaacactctctctaacacccacttttttattgacttaaat 28304075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 241
Target Start/End: Complemental strand, 32846234 - 32846185
Alignment:
Q  192 ctcactttttaattggcttaaattatggtgggtttcatactttggaaatg 241  Q
    ||||||||||||||||||||||| ||  ||||| ||| ||||||||||||    
T  32846234 ctcactttttaattggcttaaatcatattgggtctcacactttggaaatg 32846185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 40661963 - 40662016
Alignment:
Q  193 tcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    |||||| || ||||| |||||||| ||||||||| | |||||||||||||||||    
T  40661963 tcacttctttattggtttaaattagggtgggttttacactttggaaatgggttc 40662016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 179 - 244
Target Start/End: Complemental strand, 56328834 - 56328769
Alignment:
Q  179 actctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggt 244  Q
    ||||||||||||||||||||||  |||| ||||||| || ||| ||| || ||||| |||||||||    
T  56328834 actctctccaacactcacttttgtattgacttaaatcatagtgtgttccacactttagaaatgggt 56328769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 162 - 245
Target Start/End: Original strand, 42669735 - 42669820
Alignment:
Q  162 tgagaaatgctagcaacactctctc--caacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggtt 245  Q
    |||||||||||||||||||| |||   |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  42669735 tgagaaatgctagcaacactatcttttcaacactcactttttaattggcttaaatcatggtgggtttcacactttggaaatgggtt 42669820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 175 - 245
Target Start/End: Original strand, 19193523 - 19193593
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggtt 245  Q
    ||||||||||||||||||||||||| ||||| | |||||| ||||||||| ||||||||||||||| ||||    
T  19193523 caacactctctccaacactcactttctaattagtttaaatcatggtgggtctcatactttggaaataggtt 19193593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 18949215 - 18949286
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||| ||||||||||||| ||| |||||||||||||| ||||||||| ||| |||||  ||||||||||    
T  18949215 caacactttctccaacactcaatttctaattggcttaaatcatggtgggtctcacactttaaaaatgggttc 18949286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 169 - 242
Target Start/End: Complemental strand, 37078126 - 37078053
Alignment:
Q  169 tgctagcaacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgg 242  Q
    |||||||||||||||||| |||||||||||  | ||||| |||||||| ||||||| ||| || ||||||||||    
T  37078126 tgctagcaacactctctcaaacactcacttcattattggtttaaattaaggtgggtctcacacattggaaatgg 37078053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 6420475 - 6420524
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggt 224  Q
    |||||||||||||| |||||||||| | |||||||||||| |||||||||    
T  6420475 caacactctctccaccactcactttcttattggcttaaatcatggtgggt 6420524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 4024837 - 4024778
Alignment:
Q  187 caacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||| | ||| |||||||||||||| ||||||||| ||| |||||| ||||||||||    
T  4024837 caacacttattttctaattggcttaaatcatggtgggtctcacactttgaaaatgggttc 4024778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 4430134 - 4430177
Alignment:
Q  176 aacactctctccaacactcactttttaattggcttaaattatgg 219  Q
    |||||||||| ||||||||||||||| |||||||||||| ||||    
T  4430134 aacactctcttcaacactcacttttttattggcttaaatcatgg 4430177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 246
Target Start/End: Complemental strand, 19953547 - 19953484
Alignment:
Q  183 tctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||| ||||||||||| ||||| |||||| || ||| || ||| |||||||||||||||||    
T  19953547 tctccaatactcacttttttattggattaaatcatagtgagtctcacactttggaaatgggttc 19953484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 30706429 - 30706358
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    |||||||||||| |||||||||||| |  |||| |||||||| ||||||| |||||| ||| ||||| ||||    
T  30706429 caacactctctcaaacactcactttattgttggtttaaattaaggtgggtctcatacattgaaaatgagttc 30706358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 247
Target Start/End: Complemental strand, 31859192 - 31859120
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttct 247  Q
    ||||||| ||| ||||| ||||||| | |||  ||||||||||||||||||| | |||||||| ||| |||||    
T  31859192 caacactatcttcaacagtcactttcttattaacttaaattatggtgggtttgacactttggagatgagttct 31859120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 35523504 - 35523456
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtggg 223  Q
    ||||| ||||||||||| ||||||| ||||| |||||||| ||||||||    
T  35523504 caacattctctccaacattcactttctaatttgcttaaatcatggtggg 35523456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 42579822 - 42579782
Alignment:
Q  167 aatgctagcaacactctctccaacactcactttttaattgg 207  Q
    |||||||||||||||||||| |||||||||| ||| |||||    
T  42579822 aatgctagcaacactctctcaaacactcactcttttattgg 42579782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 25003526 - 25003454
Alignment:
Q  169 tgctagcaacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatg 241  Q
    ||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||    
T  25003526 tgctagcaacactctctgcaacactcacttttttattggcttaaattatgatgggtctcacactttggaaatg 25003454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 180 - 242
Target Start/End: Original strand, 46994388 - 46994450
Alignment:
Q  180 ctctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgg 242  Q
    ||||||| |||||||||||||| |||||||||||| ||||||||| ||| |||||||||||||    
T  46994388 ctctctctaacactcacttttttattggcttaaatcatggtgggtctcacactttggaaatgg 46994450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 2911921 - 2911850
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||||||||||| ||||||||||| |||||||||||| ||||||| | ||| ||||| ||||| |||||    
T  2911921 caacactctctccaatactcacttttttattggcttaaatcatggtggatctcacactttagaaataggttc 2911850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 20954839 - 20954768
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    |||||||||||| |||||||||||||| |||||||||||| |||||| || ||| ||||| |||||| ||||    
T  20954839 caacactctctcaaacactcacttttttattggcttaaatcatggtgagtctcacactttagaaatgagttc 20954768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 24845462 - 24845521
Alignment:
Q  187 caacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||||||||| |||||||||||||| |||||| || ||| |||||||||||||||||    
T  24845462 caacactcactttctaattggcttaaatcatggtgagtctcacactttggaaatgggttc 24845521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 44350303 - 44350248
Alignment:
Q  187 caacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgg 242  Q
    ||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||    
T  44350303 caacactcactttctaattggcttaaatcatggtgggtctcacactttggaaatgg 44350248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 23434848 - 23434784
Alignment:
Q  182 ctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||| || ||||||||||| |||||||||||||||||||||| ||| ||||| |||||| ||||    
T  23434848 ctctcaaatactcacttttttattggcttaaattatggtgggtctcacactttagaaatgtgttc 23434784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 144
Target Start/End: Original strand, 5884492 - 5884539
Alignment:
Q  97 ttctaaagcaatggtaacatttgatgtagtaactaggtagaactctac 144  Q
    ||||||||||||||||||| |||||||||||||||||| ||| |||||    
T  5884492 ttctaaagcaatggtaacacttgatgtagtaactaggtggaattctac 5884539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 25590803 - 25590751
Alignment:
Q  169 tgctagcaacactctctccaacactcactttttaattggcttaaattatggtg 221  Q
    |||||||||||||||||| |||||||| ||||||||||  |||||| ||||||    
T  25590803 tgctagcaacactctctcaaacactcaatttttaattgatttaaatcatggtg 25590751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 4090000 - 4090068
Alignment:
Q  176 aacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggt 244  Q
    |||| ||||||||||||||||||||| ||  ||| |||| |||||| || ||| ||||| |||||||||    
T  4090000 aacattctctccaacactcacttttttataagctaaaatcatggtgagtctcacactttagaaatgggt 4090068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 41034450 - 41034521
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||||| ||||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||||||    
T  41034450 caacactctatccaacactcactttctaattggcttaaatcatggtgggtctcacactttggaaatgggttc 41034521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 17 - 159
Target Start/End: Complemental strand, 27709535 - 27709393
Alignment:
Q  17 agggttgcatgtaagtttgtttagagttttattagtaggttggctacttacaagaagtgtacagaagttgttggcatatgttctaaagcaatggtaacat 116  Q
    |||| |||||||||||||||  |||||| |   ||||||||||| |||| |||||||||| ||||   | | ||  |||||||||||||||||||||||     
T  27709535 agggctgcatgtaagtttgtcaagagttctccaagtaggttggccactttcaagaagtgtgcagattctttaggtgtatgttctaaagcaatggtaacac 27709436  T
Q  117 ttgatgtagtaactaggtagaactctaccaatattatattgaa 159  Q
    |||||||||||||||||| ||| |||||| || |||| |||||    
T  27709435 ttgatgtagtaactaggtggaattctacctatcttatgttgaa 27709393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 25002026 - 25002094
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatggg 243  Q
    ||||||||||||||||||||||||| ||||||| |||||| || |||||| ||| ||||||||||||||    
T  25002026 caacactctctccaacactcactttctaattggtttaaatcatagtgggtctcacactttggaaatggg 25002094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 36325597 - 36325548
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggt 224  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  36325597 caacattctctccaacactcactttttaattggcttaaatcatggtgggt 36325548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 5630642 - 5630587
Alignment:
Q  187 caacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgg 242  Q
    ||||||||||||| | |||||||||||||||||||||| |||||||||| ||||||    
T  5630642 caacactcactttattattggcttaaattatggtgggtctcatactttgaaaatgg 5630587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 163 - 213
Target Start/End: Complemental strand, 41034599 - 41034549
Alignment:
Q  163 gagaaatgctagcaacactctctccaacactcactttttaattggcttaaa 213  Q
    |||||||||||| |||||| ||| ||||||||||||||||||| |||||||    
T  41034599 gagaaatgctagaaacactttcttcaacactcactttttaattcgcttaaa 41034549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 44911627 - 44911690
Alignment:
Q  177 acactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaat 240  Q
    ||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  44911627 acactctatccaacactcactttttaattggcttaaatcatggtgggtctcatactttagaaat 44911690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 10798297 - 10798368
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||||| | ||||| | ||||||||||||||||||||||| |||||| |||||||||||||||| ||||    
T  10798297 caacactcttttcaacatttactttttaattggcttaaattattgtgggtctcatactttggaaatgagttc 10798368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 167 - 240
Target Start/End: Complemental strand, 7791996 - 7791923
Alignment:
Q  167 aatgctagcaacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaat 240  Q
    ||||||||  ||||||||||||||||||||||| |||||||||||||| |  |||||| ||| |||||||||||    
T  7791996 aatgctagagacactctctccaacactcactttctaattggcttaaatcacagtgggtctcacactttggaaat 7791923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 247
Target Start/End: Original strand, 11832111 - 11832196
Alignment:
Q  162 tgagaaatgctagcaacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttct 247  Q
    ||||||||| ||  |||||| |||| |||||||  |||||||||| ||||||||||||||||||||  | ||||||||||||||||    
T  11832111 tgagaaatgttatgaacactttctctaacactcgttttttaattgacttaaattatggtgggtttcgcattttggaaatgggttct 11832196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 172 - 239
Target Start/End: Complemental strand, 214197 - 214130
Alignment:
Q  172 tagcaacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaa 239  Q
    |||||||||||||| ||||||||||||||||||||  ||||| |||| ||||| ||| ||||||||||    
T  214197 tagcaacactctcttcaacactcactttttaattgatttaaaatatgatgggtctcacactttggaaa 214130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 242
Target Start/End: Complemental strand, 21175639 - 21175584
Alignment:
Q  187 caacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgg 242  Q
    ||||||||||||| | |||||||||||||||||||||| |||||||||| ||||||    
T  21175639 caacactcactttattattggcttaaattatggtgggtctcatactttgaaaatgg 21175584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 53655427 - 53655498
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||||||||||||||||||||| |||||||||||||| || || | | ||| |||||| ||||||||||    
T  53655427 caacactctctccaacactcactttctaattggcttaaatcatagttgatctcacactttgaaaatgggttc 53655498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 176 - 246
Target Start/End: Original strand, 34706603 - 34706673
Alignment:
Q  176 aacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    |||||| |||||||||| |||||| ||||| |||||||| ||||||| | ||| |||||||||||||||||    
T  34706603 aacactatctccaacacccactttctaatttgcttaaatcatggtggatctcacactttggaaatgggttc 34706673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 224
Target Start/End: Complemental strand, 48490915 - 48490870
Alignment:
Q  179 actctctccaacactcactttttaattggcttaaattatggtgggt 224  Q
    |||||||| ||||||||||||||| ||||||||||||| |||||||    
T  48490915 actctctcaaacactcactttttatttggcttaaattaaggtgggt 48490870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 158 - 213
Target Start/End: Complemental strand, 53655582 - 53655526
Alignment:
Q  158 aatatgagaaatgctagcaacactctctccaacactcact-ttttaattggcttaaa 213  Q
    |||| |||||||| ||| |||||||||| ||||||||||| ||||||||||||||||    
T  53655582 aataagagaaatgttaggaacactctcttcaacactcacttttttaattggcttaaa 53655526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 46205564 - 46205623
Alignment:
Q  187 caacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||| ||||||||||||||||| |||| ||||| ||| ||| |||||||||||| ||||    
T  46205564 caacattcactttttaattggctgaaatcatggtaggtctcacactttggaaatgagttc 46205623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 245
Target Start/End: Complemental strand, 52223545 - 52223490
Alignment:
Q  190 cactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggtt 245  Q
    |||||||||| |||||| |||||||  |||||||| ||| ||||||||||||||||    
T  52223545 cactcactttctaattgacttaaatcgtggtgggtctcacactttggaaatgggtt 52223490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 8475317 - 8475243
Alignment:
Q  172 tagcaacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||||||||||  || ||||||||| | ||| | | |||||| ||||||| ||| |||||||||||||||||    
T  8475317 tagcaacactctcttaaagactcactttcttattagttcaaattaaggtgggtctcacactttggaaatgggttc 8475243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Original strand, 55452023 - 55452075
Alignment:
Q  162 tgagaaatgctagcaacactctctccaacactcactttttaattggcttaaat 214  Q
    |||| |||||||||||||||||||| || ||||||| ||| ||||| ||||||    
T  55452023 tgaggaatgctagcaacactctctctaatactcactctttcattggtttaaat 55452075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 18473809 - 18473738
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||||||| ||||||||||||| |||||||||||||| ||||||||| ||| |||||| ||||||||||    
T  18473809 caacactctcttcaacactcactttctaattggcttaaatcatggtgggtctcacactttgaaaatgggttc 18473738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 169 - 246
Target Start/End: Complemental strand, 25010158 - 25010082
Alignment:
Q  169 tgctagcaacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||| || ||| ||| ||||| |||||||||||    
T  25010158 tgctagcaacactctctccaacactcatttttttattggcttaaattatagt-ggtctcacactttagaaatgggttc 25010082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 187 - 239
Target Start/End: Complemental strand, 7549734 - 7549682
Alignment:
Q  187 caacactcactttttaattggcttaaattatggtgggtttcatactttggaaa 239  Q
    ||||||||||||||||||||||||||||||||||| || ||| ||||||||||    
T  7549734 caacactcactttttaattggcttaaattatggtgagtctcacactttggaaa 7549682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 187 - 246
Target Start/End: Complemental strand, 11247918 - 11247859
Alignment:
Q  187 caacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    ||||||||| |||||||||||||||||| ||||||||| ||| |||||| ||||||||||    
T  11247918 caacactcattttttaattggcttaaatcatggtgggtctcacactttgaaaatgggttc 11247859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 51512212 - 51512103
Alignment:
Q  50 agtaggttggctacttacaagaagtgtacagaagttgttggcatatgttctaaagcaatggtaacatttgatgtagtaactaggtagaactctaccaata 149  Q
    ||||| ||||| |||| |||||||||| ||||   ||| ||  ||||||||||||||||| ||||| |||||||||| ||||||| ||| |||||| ||     
T  51512212 agtagattggccactttcaagaagtgtgcagattatgtaggtgtatgttctaaagcaatgttaacacttgatgtagtgactaggtggaattctacctatc 51512113  T
Q  150 ttatattgaa 159  Q
    |||| |||||    
T  51512112 ttatgttgaa 51512103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 40125863 - 40125908
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggt 220  Q
    ||||||||||||||||| ||||||| |||||| |||||||||||||    
T  40125863 caacactctctccaacattcactttctaattgacttaaattatggt 40125908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 197 - 245
Target Start/End: Complemental strand, 33234544 - 33234496
Alignment:
Q  197 tttttaattggcttaaattatggtgggtttcatactttggaaatgggtt 245  Q
    |||||||||||||||||||||||||| | ||| ||||| ||||||||||    
T  33234544 tttttaattggcttaaattatggtggatctcacactttagaaatgggtt 33234496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 29673642 - 29673595
Alignment:
Q  167 aatgctagcaacactctctccaacactcactttttaattggcttaaat 214  Q
    |||||||||||||||||||| || ||||||||||| ||||| ||||||    
T  29673642 aatgctagcaacactctctctaatactcacttttttattggtttaaat 29673595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 9679 - 9719
Alignment:
Q  167 aatgctagcaacactctctccaacactcactttttaattgg 207  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  9679 aatgctagcaacactctctctaacactcacttttttattgg 9719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 11225 - 11265
Alignment:
Q  167 aatgctagcaacactctctccaacactcactttttaattgg 207  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  11225 aatgctagcaacactctctctaacactcacttttttattgg 11265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 296996 - 296925
Alignment:
Q  175 caacactctctccaacactcactttttaattggcttaaattatggtgggtttcatactttggaaatgggttc 246  Q
    |||||||||||| |||||||||||  | ||||| |||||| | ||||||| ||| || ||||||||||||||    
T  296996 caacactctctcaaacactcacttcattattggtttaaatgaaggtgggtctcacacattggaaatgggttc 296925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University