View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18751_high_14 (Length: 251)

Name: NF18751_high_14
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18751_high_14
NF18751_high_14
[»] chr4 (26 HSPs)
chr4 (127-233)||(24420633-24420739)
chr4 (127-233)||(24470887-24470993)
chr4 (131-233)||(24420877-24420979)
chr4 (131-233)||(24421213-24421315)
chr4 (131-233)||(24477638-24477740)
chr4 (131-233)||(24470408-24470510)
chr4 (131-233)||(24470600-24470702)
chr4 (163-233)||(24477064-24477134)
chr4 (131-207)||(24420493-24420569)
chr4 (134-233)||(24470744-24470843)
chr4 (127-210)||(24481477-24481559)
chr4 (127-177)||(24421161-24421211)
chr4 (127-177)||(24470704-24470754)
chr4 (131-192)||(24421405-24421466)
chr4 (131-192)||(24470257-24470318)
chr4 (131-207)||(24471057-24471133)
chr4 (134-238)||(24477497-24477601)
chr4 (131-213)||(24406532-24406614)
chr4 (127-233)||(24420345-24420451)
chr4 (151-213)||(24420561-24420623)
chr4 (151-213)||(24471003-24471065)
chr4 (173-231)||(24477392-24477450)
chr4 (127-180)||(24421113-24421166)
chr4 (131-192)||(24482191-24482252)
chr4 (127-231)||(24420969-24421073)
chr4 (133-233)||(24471175-24471275)
[»] scaffold0879 (5 HSPs)
scaffold0879 (131-233)||(4459-4561)
scaffold0879 (127-177)||(4563-4613)
scaffold0879 (164-233)||(4795-4864)
scaffold0879 (127-180)||(4608-4661)
scaffold0879 (127-231)||(4701-4805)
[»] chr2 (6 HSPs)
chr2 (127-222)||(41900234-41900329)
chr2 (127-192)||(41900090-41900155)
chr2 (127-192)||(41900282-41900347)
chr2 (131-192)||(41900574-41900635)
chr2 (128-189)||(41899995-41900056)
chr2 (127-195)||(41900426-41900494)
[»] chr1 (10 HSPs)
chr1 (128-213)||(11879472-11879557)
chr1 (128-216)||(11879661-11879749)
chr1 (127-233)||(11882310-11882416)
chr1 (127-233)||(11891544-11891650)
chr1 (131-180)||(11879457-11879506)
chr1 (127-180)||(11902053-11902106)
chr1 (140-189)||(11902380-11902429)
chr1 (176-233)||(52818920-52818977)
chr1 (152-228)||(11882459-11882535)
chr1 (152-228)||(11891693-11891769)


Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 24420633 - 24420739
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggt 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24420633 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggt 24420732  T
Q  227 ggaggtg 233  Q
    |||||||    
T  24420733 ggaggtg 24420739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 24470993 - 24470887
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggt 226  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||    
T  24470993 tggtggtggtggtgacttgtagatatatggaggaggtggtgaaggagatgctggaggaggtgacttataaacgtatggaggtggtggggatggagacggt 24470894  T
Q  227 ggaggtg 233  Q
    |||||||    
T  24470893 ggaggtg 24470887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 24420877 - 24420979
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggag 230  Q
    |||||||||||||| || | |||||| || || |||||||| |||||||| || |||||||| || || |||||||||||||| ||||| || |||||||    
T  24420877 ggtggtggtgacttatatacatatggtggagggggtgaaggtgatggtgggggtggagatttgtagacatatggaggtggtggagatggggatggtggag 24420976  T
Q  231 gtg 233  Q
    |||    
T  24420977 gtg 24420979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 24421213 - 24421315
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggag 230  Q
    ||||||||||||||||| | ||| || || || ||||| || ||||||||||||||||| || || || |||||||||||||| |||||||| ||||| |    
T  24421213 ggtggtggtgacttgtaaacataaggtgggggaggtgagggtgatggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtggtg 24421312  T
Q  231 gtg 233  Q
    |||    
T  24421313 gtg 24421315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 131 - 233
Target Start/End: Original strand, 24477638 - 24477740
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggag 230  Q
    |||||||| |||||||| | ||||||||| |||||||| ||||||||||| |||||||| ||||| || || || |||||||| ||||| ||  ||||||    
T  24477638 ggtggtggggacttgtacacatatggaggaggtggtgagggagatggtggtggaggagacttatagacataaggtggtggtggtgatggggatcgtggag 24477737  T
Q  231 gtg 233  Q
    |||    
T  24477738 gtg 24477740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 24470510 - 24470408
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggag 230  Q
    ||||||||||||||||| | ||| || || || ||||| || | ||||||||||||||| || || || |||||||||||||| |||||||| ||||| |    
T  24470510 ggtggtggtgacttgtaaacatagggcgggggaggtgagggtgttggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtggtg 24470411  T
Q  231 gtg 233  Q
    |||    
T  24470410 gtg 24470408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 24470702 - 24470600
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggag 230  Q
    |||||||| ||||| || ||||| || || || || ||||| ||||||||||||||||| || || || |||||||||||||| |||||||| ||||| |    
T  24470702 ggtggtggcgacttataaatatagggtgggggaggagaaggtgatggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtggtg 24470603  T
Q  231 gtg 233  Q
    |||    
T  24470602 gtg 24470600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 24477064 - 24477134
Alignment:
Q  163 tggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggaggtg 233  Q
    ||||| ||| |||||||| || |||||||| ||||| ||||||||||||||||||||||| || |||||||    
T  24477064 tggtggaggggatggtgggggtggagatttgtaaacatatggaggtggtggggatggagatggaggaggtg 24477134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 207
Target Start/End: Original strand, 24420493 - 24420569
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggagg 207  Q
    ||||| |||||||| |||| ||| || || || ||||||||||||||||| ||||||||||| ||||| ||||||||    
T  24420493 ggtggaggtgacttatagacatagggtggagggggtgaaggagatggtgggggaggagatttgtaaacatatggagg 24420569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 24470843 - 24470744
Alignment:
Q  134 ggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggaggtg 233  Q
    ||||||||||| || | |||||| || || |||||||| |||||||| || |||||||| || || ||||| |||||||| ||||| || ||||||||||    
T  24470843 ggtggtgacttatatacatatggtggagggggtgaaggtgatggtgggggtggagatttgtagacatatggtggtggtggagatggggatggtggaggtg 24470744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 24481477 - 24481559
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtgg 210  Q
    |||||| ||||| |||||||| | |||||| || |||||||| |||||||||||||||||||| || || || |||||||||||    
T  24481477 tggtggaggtggcgacttgtatacatatggtgg-ggtggtgatggagatggtggaggaggagacttgtagacatatggaggtgg 24481559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 177
Target Start/End: Original strand, 24421161 - 24421211
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatgg 177  Q
    ||||||||||||||||||||||| ||||||||| || |||||||| |||||    
T  24421161 tggtggtggtggtgacttgtagacatatggaggaggaggtgaaggggatgg 24421211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 24470754 - 24470704
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatgg 177  Q
    |||||| |||||||||||||||| ||||||||| || ||||||||||||||    
T  24470754 tggtggaggtggtgacttgtagacatatggaggaggaggtgaaggagatgg 24470704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 24421405 - 24421466
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagattt 192  Q
    |||||||| |||||||| | ||| ||||| |||||||| |||||||||||||| ||||||||    
T  24421405 ggtggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggagattt 24421466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Complemental strand, 24470318 - 24470257
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagattt 192  Q
    |||||||| |||||||| | ||| ||||| |||||||| |||||||||||||| ||||||||    
T  24470318 ggtggtggggacttgtacacatacggaggaggtggtgagggagatggtggaggtggagattt 24470257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 207
Target Start/End: Complemental strand, 24471133 - 24471057
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggagg 207  Q
    ||||| |||||||| | || ||| || || || ||||||||||||||||| ||||||||||| ||||| ||||||||    
T  24471133 ggtggaggtgacttatggacatagggtggaggaggtgaaggagatggtgggggaggagatttgtaaacatatggagg 24471057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 24477497 - 24477601
Alignment:
Q  134 ggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggaggtg 233  Q
    |||||||||||||||| ||||||||| || ||||| ||||||||||| || |||   ||||| || ||||| || || ||| | |||||||| |||||||    
T  24477497 ggtggtgacttgtagacatatggaggtggaggtgagggagatggtggtggtggactcttatagacatatggtgggggagggaaaggagacggaggaggtg 24477596  T
Q  234 atgat 238  Q
     ||||    
T  24477597 gtgat 24477601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 24406532 - 24406614
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtgg 213  Q
    ||||||||||||||  ||| ||| || || || ||||||||||||||||| || |||||||| ||||| || || ||||||||    
T  24406532 ggtggtggtgacttaaagacataaggtggaggaggtgaaggagatggtgggggtggagatttgtaaacatacggtggtggtgg 24406614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 233
Target Start/End: Original strand, 24420345 - 24420451
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggt 226  Q
    |||||| ||||| |||||||| ||||| ||||||||||||||||| || || || || || || |||||  | ||||| || || || |||||||| |||    
T  24420345 tggtggaggtggagacttgtaaatataaggaggcggtggtgaaggcgaaggaggtggcggtgacttatagccatatggtggaggaggtgatggagaaggt 24420444  T
Q  227 ggaggtg 233  Q
    |||||||    
T  24420445 ggaggtg 24420451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Original strand, 24420561 - 24420623
Alignment:
Q  151 atatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtgg 213  Q
    ||||||||| || ||||||||||| || |||||||| || ||||| || ||||||||||||||    
T  24420561 atatggaggagggggtgaaggagaaggaggaggaggggacttatagacatatggaggtggtgg 24420623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 213
Target Start/End: Complemental strand, 24471065 - 24471003
Alignment:
Q  151 atatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtgg 213  Q
    ||||||||| || ||||||||||| || |||||||| || ||||| ||||||||||| |||||    
T  24471065 atatggaggagggggtgaaggagaaggaggaggaggggacttatagacgtatggagggggtgg 24471003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 24477392 - 24477450
Alignment:
Q  173 gatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggagg 231  Q
    ||||||||||||||||| || || || |||||||||||||| |||||||| ||| ||||    
T  24477392 gatggtggaggaggagacttgtagacatatggaggtggtggtgatggagaaggtagagg 24477450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 180
Target Start/End: Original strand, 24421113 - 24421166
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtgg 180  Q
    |||||||||||| |||||||| ||||||||||| ||||| || || ||||||||    
T  24421113 tggtggtggtggggacttgtaaatatatggaggtggtggagatggggatggtgg 24421166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 24482191 - 24482252
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagattt 192  Q
    ||||||||||| || |||| ||| ||||| |||||||| ||||||||||| || ||||||||    
T  24482191 ggtggtggtgatttatagacataaggaggtggtggtgatggagatggtggtggtggagattt 24482252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 231
Target Start/End: Original strand, 24420969 - 24421073
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggt 226  Q
    |||||| |||||||||||||||| |||||| || || || || |||||||| || || || |||||||| || ||||| || || ||||| || || |||    
T  24420969 tggtggaggtggtgacttgtagacatatggtggagggggggatggagatgggggtggtggtgatttatatacatatggtgggggaggggagggtgatggt 24421068  T
Q  227 ggagg 231  Q
    |||||    
T  24421069 ggagg 24421073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 233
Target Start/End: Complemental strand, 24471275 - 24471175
Alignment:
Q  133 tggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggaggt 232  Q
    |||||| |||||||| ||||| ||||||||||||||||| || || || || || ||  |||| || ||||| || || || |||||||| |||||||||    
T  24471275 tggtggagacttgtaaatataaggaggcggtggtgaaggcgaaggaggtggcggtgacctatagacatatggtggaggaggtgatggagaaggtggaggt 24471176  T
Q  233 g 233  Q
    |    
T  24471175 g 24471175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 4561 - 4459
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggag 230  Q
    ||||||||||||||||| | |||||| || || ||||| || ||||||||||||||||| || || || |||||||||||||| |||||||| ||||| |    
T  4561 ggtggtggtgacttgtaaacatatggtgggggaggtgagggtgatggtggaggaggagacttgtagacatatggaggtggtggtgatggagagggtggtg 4462  T
Q  231 gtg 233  Q
    |||    
T  4461 gtg 4459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 4613 - 4563
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatgg 177  Q
    ||||||||||||||||||||||| ||||||||| || |||||||| |||||    
T  4613 tggtggtggtggtgacttgtagacatatggaggaggaggtgaaggggatgg 4563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 164 - 233
Target Start/End: Complemental strand, 4864 - 4795
Alignment:
Q  164 ggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggaggtg 233  Q
    |||||||| |||||||| || |||||||| || || |||||||||||||| ||||| || ||||||||||    
T  4864 ggtgaaggtgatggtgggggtggagatttgtagacatatggaggtggtggagatggggatggtggaggtg 4795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 4661 - 4608
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtgg 180  Q
    |||||||||||| |||||||| ||||||||||| ||||| || || ||||||||    
T  4661 tggtggtggtggggacttgtaaatatatggaggtggtggagatggggatggtgg 4608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 4805 - 4701
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggt 226  Q
    |||||| |||||||||||||||| |||||| || || || || |||||||| || || || |||||||| || ||||| || || ||||| || || |||    
T  4805 tggtggaggtggtgacttgtagacatatggtggagggggggatggagatgggggtggtggtgatttatatacatatggtgggggaggggagggtgatggt 4706  T
Q  227 ggagg 231  Q
    |||||    
T  4705 ggagg 4701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 222
Target Start/End: Original strand, 41900234 - 41900329
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggaga 222  Q
    |||||||||||| ||||||||||| || | | | ||| |||| | |||||||||||||||||| || || || |||||||||||||| || |||||    
T  41900234 tggtggtggtggggacttgtagatgtaagaaaggggtagtgatgcagatggtggaggaggagacttgtagacatatggaggtggtggtgaaggaga 41900329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 41900090 - 41900155
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagattt 192  Q
    ||||||||| || || ||||| | |||||||||||||||||||||||| || || |||||||||||    
T  41900090 tggtggtggaggagatttgtaaacatatggaggcggtggtgaaggagagggaggtggaggagattt 41900155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 41900282 - 41900347
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagattt 192  Q
    |||||| || || |||||||||| ||||||||| |||||||||||||| || || |||||||||||    
T  41900282 tggtggaggaggagacttgtagacatatggaggtggtggtgaaggagagggaggtggaggagattt 41900347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 192
Target Start/End: Original strand, 41900574 - 41900635
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagattt 192  Q
    |||||||||||||| || ||||| || || |||||||||||||||||||| || ||||||||    
T  41900574 ggtggtggtgacttataaatataaggtggaggtggtgaaggagatggtggtggtggagattt 41900635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 189
Target Start/End: Original strand, 41899995 - 41900056
Alignment:
Q  128 ggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggaga 189  Q
    ||||||||||| |||||||||| |||||| || || ||||||||||| || ||||| |||||    
T  41899995 ggtggtggtggggacttgtagacatatggtggtggaggtgaaggagagggaggaggtggaga 41900056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Original strand, 41900426 - 41900494
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttata 195  Q
    |||||||||||| ||||||||||| || | | | ||| |||| | |||||||||||||||||| |||||    
T  41900426 tggtggtggtggggacttgtagatgtaagaaaggggtagtgatgcagatggtggaggaggagacttata 41900494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 11879557 - 11879472
Alignment:
Q  128 ggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtgg 213  Q
    |||||||||||||||||||| | ||| ||||| ||||||||||||||||| || || || || || || || || |||||||||||    
T  11879557 ggtggtggtggtgacttgtacacataaggaggtggtggtgaaggagatggcggtggtggtgacttgtacacataaggaggtggtgg 11879472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 11879749 - 11879661
Alignment:
Q  128 ggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtgggga 216  Q
    |||||||| || |||||||||  |||||| || || ||||| ||||||||||| |||||||| || |||  |||||| |||||||||||    
T  11879749 ggtggtgggggagacttgtagtaatatggtggtggaggtgagggagatggtggtggaggagacttgtaatagtatggtggtggtgggga 11879661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 11882416 - 11882310
Alignment:
Q  127 tggtggtggtggtgacttgtagata-tatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacgg 225  Q
    ||||||||| ||||| ||||| ||| || ||||| |||||||| || |||||||| ||||||||||| |||  ||||||||| || |||||||| || ||    
T  11882416 tggtggtggaggtgatttgta-atagtagggaggtggtggtgatggtgatggtggtggaggagatttgtaatagtatggagggggaggggatggtgatgg 11882318  T
Q  226 tggaggtg 233  Q
    ||| ||||    
T  11882317 tgggggtg 11882310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 233
Target Start/End: Complemental strand, 11891650 - 11891544
Alignment:
Q  127 tggtggtggtggtgacttgtagata-tatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacgg 225  Q
    ||||||||| ||||| ||||| ||| || ||||| |||||||| || |||||||| ||||||||||| |||  ||||||||| || |||||||| || ||    
T  11891650 tggtggtggaggtgatttgta-atagtagggaggtggtggtgatggtgatggtggtggaggagatttgtaatagtatggagggggaggggatggtgatgg 11891552  T
Q  226 tggaggtg 233  Q
    ||| ||||    
T  11891551 tgggggtg 11891544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 11879506 - 11879457
Alignment:
Q  131 ggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtgg 180  Q
    ||||||||||||||||| | ||| ||||| ||||||||||||| ||||||    
T  11879506 ggtggtggtgacttgtacacataaggaggtggtggtgaaggagttggtgg 11879457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 180
Target Start/End: Complemental strand, 11902106 - 11902053
Alignment:
Q  127 tggtggtggtggtgacttgtagatatatggaggcggtggtgaaggagatggtgg 180  Q
    ||||||||||||||||||||| | ||| ||||| |||||||||| || ||||||    
T  11902106 tggtggtggtggtgacttgtatacataaggaggtggtggtgaagaagttggtgg 11902053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 11902429 - 11902380
Alignment:
Q  140 gacttgtagatatatggaggcggtggtgaaggagatggtggaggaggaga 189  Q
    |||||||||  ||||||||| |||||||| ||||||||||| ||||||||    
T  11902429 gacttgtagtaatatggaggaggtggtgagggagatggtggtggaggaga 11902380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 233
Target Start/End: Original strand, 52818920 - 52818977
Alignment:
Q  176 ggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtggaggtg 233  Q
    ||||| |||||||||||||||  ||||||||| || |||||||| || ||||||||||    
T  52818920 ggtggtggaggagatttataatagtatggagggggaggggatggtgatggtggaggtg 52818977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 11882535 - 11882459
Alignment:
Q  152 tatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtgg 228  Q
    |||||||| |||||||| || |||||||| ||||| ||||| |||  ||| ||||||||||| ||||| || |||||    
T  11882535 tatggaggtggtggtgatggggatggtggtggaggtgatttgtaatagtaaggaggtggtggtgatggtgatggtgg 11882459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 11891769 - 11891693
Alignment:
Q  152 tatggaggcggtggtgaaggagatggtggaggaggagatttataaacgtatggaggtggtggggatggagacggtgg 228  Q
    |||||||| |||||||| || |||||||| ||||| ||||| |||  ||| ||||||||||| ||||| || |||||    
T  11891769 tatggaggtggtggtgatggggatggtggtggaggtgatttgtaatagtaaggaggtggtggtgatggtgatggtgg 11891693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University