View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18751_high_7 (Length: 397)
Name: NF18751_high_7
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18751_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 19 - 380
Target Start/End: Complemental strand, 44655457 - 44655099
Alignment:
| Q |
19 |
atactatcaacgtataatcgttggtgaacatatacattcattcataatcattcaattagatgacatgttagaagagatatctgaacgtacaaacatagac |
118 |
Q |
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| T |
44655457 |
atacaatcaacgtataatcattggtgaacatatacattcat----aatcattcaattagatgacatgtcagaagagatatctgaacgtacaaacatagac |
44655362 |
T |
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| Q |
119 |
aaatctactctaacatagacagatctataaacataataattatatgataataaacaagtcatgttcgacatcacaaa-atatcatatcaataagaacacg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
44655361 |
aaatctactctaacatagacagatctataaacataataattatatgataataaacaagtcatgttcgacatcacaaagatatcatatcaataagaacatg |
44655262 |
T |
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| Q |
218 |
tgcatcaaacagaagccaatcctgcatgaataggcaatgccaaagaccaaatttaggtctagtatatgggacaaacattcatgacactatgcttcaaatt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44655261 |
tgcatcaaacagaagccaatcctgcatgaataggcaatgccaaagaccaaatttaggtctagtatatgggacaaacattcatgacactatgcttcaaatt |
44655162 |
T |
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| Q |
318 |
tttgcaggtttgggaagaaaagggaacgagttacannnnnnnnatggcataagttgtgtggct |
380 |
Q |
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|||||||||||||||||||||||||| | |||||| |||||||||||||||||||| |
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| T |
44655161 |
tttgcaggtttgggaagaaaagggaaagggttacattttttttatggcataagttgtgtggct |
44655099 |
T |
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