View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18751_low_10 (Length: 339)
Name: NF18751_low_10
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18751_low_10 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 325
Target Start/End: Complemental strand, 8862845 - 8862523
Alignment:
| Q |
9 |
taattcttcaatatgttctttgctctttaagtca------tatgcctccacaacatcaatgacgttctgtaggttcttgataaataactttccctgtagc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| |
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|
| T |
8862845 |
taattcttcaatatgttctttgctctttaagtcagcatcatatgcctccacaacatcaatgacgttttgcaggttcttgataaataacttcccctgtagc |
8862746 |
T |
|
| Q |
103 |
tttggaaaccttgcaagctccttaacacttaaaccaacattttgtttgcctaccataaaatcagttaaagtttggagattttctagttcaataatttgct |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||| ||||||||||||| ||||||||||| |||| |||||||| |
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|
| T |
8862745 |
tttggaaaccttgcaagctctctaacacttaaaccaacatttttcttgcctactatgaaaacagttaaagtttgaagattttctagctcaacaatttgct |
8862646 |
T |
|
| Q |
203 |
ttggcatctccattatgcttgtgaaatggatatcaaggtgacgtaaattaatcaactttccaacatgttccggcaattcaatgagatttgagcaagatga |
302 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||| |
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|
| T |
8862645 |
ttggcatctctgttatgcctgtgaaatcgatatcaaggtgacgtaaattaatcaattttccgacatgttccggcaattcaatgagatttgagcaaaatga |
8862546 |
T |
|
| Q |
303 |
taaaatcaaggtttgcaaatagt |
325 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
8862545 |
taaaatcaaggtttgcaaatagt |
8862523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 9 - 325
Target Start/End: Original strand, 11129539 - 11129861
Alignment:
| Q |
9 |
taattcttcaatatgttctttgctctttaagtca------tatgcctccacaacatcaatgacgttctgtaggttcttgataaataactttccctgtagc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
11129539 |
taattcttcaatatgttctttgctctttaagtcagcatcatatgcctccacaacatcaatgacattctgcaggttcttgataaataacttcccctgtagc |
11129638 |
T |
|
| Q |
103 |
tttggaaaccttgcaagctccttaacacttaaaccaacattttgtttgcctaccataaaatcagttaaagtttggagattttctagttcaataatttgct |
202 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| ||||| || | |||| |||||||||||| ||||||||||| |||| |||||||| |
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|
| T |
11129639 |
tttggaaaccttgcaagctccctaacacttaaaccgacattttgcttgcccacgagaaaaatagttaaagtttgaagattttctagctcaacaatttgct |
11129738 |
T |
|
| Q |
203 |
ttggcatctccattatgcttgtgaaatggatatcaaggtgacgtaaattaatcaactttccaacatgttccggcaattcaatgagatttgagcaagatga |
302 |
Q |
| |
|
|||||||||| |||||| |||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||| |
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|
| T |
11129739 |
ttggcatctctgttatgcctgtgaaatcgatatcaaggtgacgtaaattaatcaattttccgacatgttccggcaattcactgagatttgagcaaaatga |
11129838 |
T |
|
| Q |
303 |
taaaatcaaggtttgcaaatagt |
325 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
11129839 |
taaaatcaaggtttgcaaatagt |
11129861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 325
Target Start/End: Original strand, 11147364 - 11147686
Alignment:
| Q |
9 |
taattcttcaatatgttctttgctctttaagtca------tatgcctccacaacatcaatgacgttctgtaggttcttgataaataactttccctgtagc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
11147364 |
taattcttcaatatgttctttgctctttaagtcagcatcatatgcctccgcaacatcaatgacgttctgcaggttcttgataaataacttcccctgtagc |
11147463 |
T |
|
| Q |
103 |
tttggaaaccttgcaagctccttaacacttaaaccaacattttgtttgcctaccataaaatcagttaaagtttggagattttctagttcaataatttgct |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||| ||| ||||||||| ||||||||||| |||| |||||||| |
|
|
| T |
11147464 |
tttggaaaccttgcaagctctctaacacttaaaccaacatttttcttgcctactatgaaaacagataaagtttgaagattttctagctcaacaatttgct |
11147563 |
T |
|
| Q |
203 |
ttggcatctccattatgcttgtgaaatggatatcaaggtgacgtaaattaatcaactttccaacatgttccggcaattcaatgagatttgagcaagatga |
302 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
11147564 |
ttggcatctctgttatgcctgtgaaaatgatatcaaggtgacgtaaattaatcaactttccgacatgttccggcaattcaatgagctttgagcaaaatga |
11147663 |
T |
|
| Q |
303 |
taaaatcaaggtttgcaaatagt |
325 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
11147664 |
taagatcaaggtttgcaaatagt |
11147686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 9 - 325
Target Start/End: Original strand, 11158527 - 11158849
Alignment:
| Q |
9 |
taattcttcaatatgttctttgctctttaagtca------tatgcctccacaacatcaatgacgttctgtaggttcttgataaataactttccctgtagc |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
11158527 |
taattcttcaatatgttctttgctctttaagtcagcatcatatgcctccacaacatcaatgatgttctgaaggttcttgataaataacttcccctgtagc |
11158626 |
T |
|
| Q |
103 |
tttggaaaccttgcaagctccttaacacttaaaccaacattttgtttgcctaccataaaatcagttaaagtttggagattttctagttcaataatttgct |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||| || ||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11158627 |
tttggaaaccttgcaagctctctaacacttaaaccaacatttttcttgcctactatgaaaacagttaaagtttgaagattttctagttcaataatttgct |
11158726 |
T |
|
| Q |
203 |
ttggcatctccattatgcttgtgaaatggatatcaaggtgacgtaaattaatcaactttccaacatgttccggcaattcaatgagatttgagcaagatga |
302 |
Q |
| |
|
|||||||||| |||| |||||| |||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||| || ||||| |||| |
|
|
| T |
11158727 |
ttggcatctctgttattcttgtgtaatggatatcaaggtgacgtaaattaattaactttccaatatgttctggcaattcaatgaatttaaagcaatatga |
11158826 |
T |
|
| Q |
303 |
taaaatcaaggtttgcaaatagt |
325 |
Q |
| |
|
|||||||||||||||||| |||| |
|
|
| T |
11158827 |
taaaatcaaggtttgcaagtagt |
11158849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 324
Target Start/End: Complemental strand, 10890865 - 10890544
Alignment:
| Q |
9 |
taattcttcaatatgttctttgctctttaagtca------tatgcctccacaacatcaatgacgttctgtaggttcttgataaataactttccctgtagc |
102 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
10890865 |
taattcctcaatatgttctttgctctttaagtcagcatcatatgcctccacaacatcaatgacgttctgcaggttcttgataaataacttcccctgtagc |
10890766 |
T |
|
| Q |
103 |
tttggaaaccttgcaagctccttaacacttaaaccaacattttgtttgcctaccataaaatcagttaaagtttggagattttctagttcaataatttgct |
202 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||| |||||||| || ||| ||| ||||||||| ||||||| ||| |||| |||||||| |
|
|
| T |
10890765 |
tttggaaaccttgcaagctctctaacacttaaaccaacacttttcttgcctactatgaaaacagctaaagtttgaagattttttagctcaacaatttgct |
10890666 |
T |
|
| Q |
203 |
ttggcatctccattatgcttgtgaaatggatatcaaggtgacgtaaattaatcaactttccaacatgttccggcaattcaatgagatttgagcaagatga |
302 |
Q |
| |
|
| |||||||| |||||| |||| ||| |||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
10890665 |
tgggcatctctgttatgcctgtgcaatcgatagcaaggtaacgtaaattaatcaactttccgacatgttccggcaattcaatgagagttaagcaaaatga |
10890566 |
T |
|
| Q |
303 |
taaaatcaaggtttgcaaatag |
324 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
10890565 |
taaaatcaaggtttgcaaatag |
10890544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 181 - 275
Target Start/End: Original strand, 11245311 - 11245405
Alignment:
| Q |
181 |
ttttctagttcaataatttgctttggcatctccattatgcttgtgaaatggatatcaaggtgacgtaaattaatcaactttccaacatgttccgg |
275 |
Q |
| |
|
|||| |||||||| || |||||||||||||| ||||||||| || |||| |||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
11245311 |
ttttttagttcaacaagttgctttggcatcttcattatgctcgtaaaatcgatatcaaggtgacgtaaattaattaactttccaatgtgttccgg |
11245405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 325
Target Start/End: Complemental strand, 13396993 - 13396723
Alignment:
| Q |
55 |
acatcaatgacgttctgtaggttcttgataaataactttccctgtagctttggaaaccttgcaagctccttaacacttaaaccaacattttgtttgccta |
154 |
Q |
| |
|
||||||||| | ||||||||||||||||| | | |||||| |||| || |||||| | ||||||| | | |||||| ||||| ||||| ||||| | |
|
|
| T |
13396993 |
acatcaatggcattctgtaggttcttgatgcaaagttttccccgtaggttaggaaacttcccaagctctctgatacttaacccaactttttgcttgccca |
13396894 |
T |
|
| Q |
155 |
ccataaaatcagttaaagtttggagattttctagttcaataatttgctttggcatctccattatgcttgtgaaatggatatcaaggtgacgtaaattaat |
254 |
Q |
| |
|
| | |||| |||||| ||||| || ||||||||| | ||||||| ||||||||| | |||| |||| | ||||| |||||||| ||||| || |
|
|
| T |
13396893 |
ctagaaaaacagttagtgtttgaaggttttctagtctgacaatttgcattggcatcttctttatctttgtatagctaatatctaggtgacgcaaatttat |
13396794 |
T |
|
| Q |
255 |
caactttccaacatgttccggcaattcaatgagatttgagcaagatgataaaatcaaggtttgcaaatagt |
325 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || |||| |||||||| || ||||||||||||| |
|
|
| T |
13396793 |
caactttccaacatgtatcggcaattcaatgagtttccagcaccctgataaaagtaaagtttgcaaatagt |
13396723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 166 - 327
Target Start/End: Original strand, 31678406 - 31678567
Alignment:
| Q |
166 |
gttaaagtttggagattttctagttcaataatttgctttggcatctccattatgcttgtgaaatggatatcaaggtgacgtaaattaatcaactttccaa |
265 |
Q |
| |
|
|||||| |||| || ||||||||| ||| ||| | | ||||||||||| ||||| | || | | ||||| ||||||||||||||||| |||||||||| |
|
|
| T |
31678406 |
gttaaaatttgaaggttttctagtgcaagaatctccattggcatctcctttatgttcgtccagttaatatctaggtgacgtaaattaattaactttccaa |
31678505 |
T |
|
| Q |
266 |
catgttccggcaattcaatgagatttgagcaagatgataaaatcaaggtttgcaaatagtga |
327 |
Q |
| |
|
|||| |||| ||||||||||||| ||||| ||||||||||||| |||||||||| |||| |
|
|
| T |
31678506 |
tatgtaccggtaattcaatgagatgatagcaatatgataaaatcaatgtttgcaaattgtga |
31678567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 289
Target Start/End: Complemental strand, 827298 - 827175
Alignment:
| Q |
166 |
gttaaagtttggagattttctagttcaataatttgctttggcatctccattatgcttgtgaaatggatatcaaggtgacgtaaattaatcaactttccaa |
265 |
Q |
| |
|
||||||||||| || ||||||||| ||| ||||||||| ||||||||| ||||| || |||||||||||||||||||||||| |||||||||| |
|
|
| T |
827298 |
gttaaagtttgaaggttttctagtccaacaatttgcttcggcatctcctttatgtttccattgctgatatcaaggtgacgtaaattaattaactttccaa |
827199 |
T |
|
| Q |
266 |
catgttccggcaattcaatgagat |
289 |
Q |
| |
|
|||| || ||||||||||||| |
|
|
| T |
827198 |
tatgtatcgataattcaatgagat |
827175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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