View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18751_low_11 (Length: 293)
Name: NF18751_low_11
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18751_low_11 |
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| [»] scaffold0006 (4 HSPs) |
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| [»] scaffold0291 (1 HSPs) |
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Alignment Details
Target: scaffold0006 (Bit Score: 247; Significance: 1e-137; HSPs: 4)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 130993 - 131266
Alignment:
| Q |
1 |
accttctaatgataacttcctgctaaaagtgacaataagaactcaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttca |
100 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130993 |
acctgctaatgataacttcctgctaaaagcgacaataagaactgaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttca |
131092 |
T |
|
| Q |
101 |
tgccattaaacaatattgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
131093 |
tgccattaaaca---ttgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatat |
131189 |
T |
|
| Q |
201 |
aggttattagctgactaggtgcccttgctcaacacaaccttcaagtattcgctctctgtggttcgtggactctgttt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
131190 |
aggttattagctgactaggtgcccttgctcaacacaaccttcaagtattcactctctgtggttcgtggactctgttt |
131266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 125334 - 125370
Alignment:
| Q |
1 |
accttctaatgataacttcctgctaaaagtgacaata |
37 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
125334 |
acctactaatgataacttcctgctaaaagtgacaata |
125370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 186
Target Start/End: Original strand, 125448 - 125477
Alignment:
| Q |
157 |
atgattatacaacctatggactctcacaaa |
186 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
125448 |
atgattatacaacctatggactctcacaaa |
125477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 194837 - 194870
Alignment:
| Q |
1 |
accttctaatgataacttcctgctaaaagtgaca |
34 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
194837 |
acctgctaatgataacttcctgctaaaagtgaca |
194870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 13602336 - 13602609
Alignment:
| Q |
1 |
accttctaatgataacttcctgctaaaagtgacaataagaactcaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttca |
100 |
Q |
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|
|||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13602336 |
acctgctaatgataacttcctgctaaaagcgacaataagaactgaacaacaggacaaatatagggaatgtttgtgattcctttttgcacaagcattttca |
13602435 |
T |
|
| Q |
101 |
tgccattaaacaatattgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13602436 |
tgccattaaaca---ttgatgatcggtttctcagtttttctcccaatcttatctaaatgattatacaacctatggactctcacaaactatgagcacatat |
13602532 |
T |
|
| Q |
201 |
aggttattagctgactaggtgcccttgctcaacacaaccttcaagtattcgctctctgtggttcgtggactctgttt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13602533 |
aggttattagctgactaggtgcccttgctcaacacaaccttcaagtattcactctctgtggttcgtggactctgttt |
13602609 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 23833668 - 23833625
Alignment:
| Q |
216 |
taggtgcccttgctcaacacaaccttcaagtattcgctctctgt |
259 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
23833668 |
taggttcccttgctcaacacaaccttcaagtattcactctctgt |
23833625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 39
Target Start/End: Original strand, 13487572 - 13487606
Alignment:
| Q |
5 |
tctaatgataacttcctgctaaaagtgacaataag |
39 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
13487572 |
tctaatgataacttcctgttaaaagtgacaataag |
13487606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 4800041 - 4800005
Alignment:
| Q |
223 |
ccttgctcaacacaaccttcaagtattcgctctctgt |
259 |
Q |
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| T |
4800041 |
ccttgctcaacacaaccttcaagtattcactctctgt |
4800005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 247
Target Start/End: Complemental strand, 4800084 - 4800047
Alignment:
| Q |
210 |
gctgactaggtgcccttgctcaacacaaccttcaagta |
247 |
Q |
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||||| ||||| |||||||||||||||||||||||||| |
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| T |
4800084 |
gctgattaggttcccttgctcaacacaaccttcaagta |
4800047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 186
Target Start/End: Original strand, 21770274 - 21770303
Alignment:
| Q |
157 |
atgattatacaacctatggactctcacaaa |
186 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
21770274 |
atgattatacaacctatggactctcacaaa |
21770303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0291 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0291
Description:
Target: scaffold0291; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 196
Target Start/End: Complemental strand, 17845 - 17805
Alignment:
| Q |
157 |
atgattatacaacctatggactctc-acaaactatgagcac |
196 |
Q |
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|||||||||||||||||||||| || ||||||||||||||| |
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| T |
17845 |
atgattatacaacctatggactgtcaacaaactatgagcac |
17805 |
T |
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