View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18751_low_13 (Length: 265)
Name: NF18751_low_13
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18751_low_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 30708813 - 30709047
Alignment:
| Q |
19 |
gttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggcata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708813 |
gttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggcata |
30708912 |
T |
|
| Q |
119 |
gatggtatgcagaatccaagttagtaatcatcacttttgaataatcttcggttctttactcacttgttggcttcctcacatttgtgtcagcggctcacaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708913 |
gatggtatgcagaatccaagttagtaatcatcacttttgagtaatcttcggttctttactcacttgttggcttcctcacatttgtgtcagcggctcacaa |
30709012 |
T |
|
| Q |
219 |
aattataatatgcacagtcgaacacagttcagtat |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
30709013 |
aattataatatgcacagtcgaacacagttcagtat |
30709047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 19 - 203
Target Start/End: Original strand, 30699341 - 30699522
Alignment:
| Q |
19 |
gttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggcata |
118 |
Q |
| |
|
||||||||||||| | ||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30699341 |
gttccagaacctacgtgtgtcagagatgcaacagaggaattgaatacaatgcttc---catttccagattctttaagaagaggatatgtcagttggcata |
30699437 |
T |
|
| Q |
119 |
gatggtatgcagaatccaagttagtaatcatcacttttgaataatcttcggttctttactcacttgttggcttcctcacatttgt |
203 |
Q |
| |
|
||||||||||||||||||||||| || |||||| ||||||||||||||| ||| | |||||| ||||||| |||||||||||||| |
|
|
| T |
30699438 |
gatggtatgcagaatccaagttaatagtcatcaattttgaataatcttctgttgtatactcaattgttggtttcctcacatttgt |
30699522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 30706177 - 30706357
Alignment:
| Q |
20 |
ttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggcatag |
119 |
Q |
| |
|
|||||| ||||| ||| ||||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
30706177 |
ttccagtacctacacttattagagatgcaacagaggaaatgaacacaatgcttc---catttccagattctttaagaagaggatatgctagttgacatag |
30706273 |
T |
|
| Q |
120 |
atggtatgcagaatccaagttagtaatcatcacttttgaataatcttcggttctttactcacttgttggcttcctcacatttgt |
203 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| | | |||||| |||||||||||||||||||||| |
|
|
| T |
30706274 |
atggtatgcagaatccaagttagtagtcatcacttttgaataatcttcggctgtatactcaattgttggcttcctcacatttgt |
30706357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 203
Target Start/End: Original strand, 30719160 - 30719340
Alignment:
| Q |
20 |
ttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggcatag |
119 |
Q |
| |
|
|||||| ||||| |||||| ||||| |||| |||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30719160 |
ttccagtacctacgcttgtcagagacccaacagaggaaatgaaaacaatgcttc---catttccagattctttaagaagaggatatgtcagttggcatag |
30719256 |
T |
|
| Q |
120 |
atggtatgcagaatccaagttagtaatcatcacttttgaataatcttcggttctttactcacttgttggcttcctcacatttgt |
203 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||| ||||||||||||| | ||||| |||||||||||||||||||||| |
|
|
| T |
30719257 |
atgatatgcagaatccaagttagtagtcatcactttcgaataatcttcggccgtatactcgattgttggcttcctcacatttgt |
30719340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University