View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18751_low_17 (Length: 233)
Name: NF18751_low_17
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18751_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 41910829 - 41910614
Alignment:
| Q |
10 |
tcagattcaaaatctgtctttttactactagagcaagtttcatcggttatctttacatgttgaggaagagcttttttcatcaatctatgcacattggcaa |
109 |
Q |
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| T |
41910829 |
tcagattcaagacctgtctttttaccactagagcaagtttcatcggttatctttgcatgttgaggaagagcttttttcatcaatctatgcacattggcaa |
41910730 |
T |
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| Q |
110 |
tgggaaaggctcttgaaaattcttcttgcaccctcgaactagctggttgcactccatcctctaacatcaccacaatagtagttatatataattggcgtga |
209 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
41910729 |
tgggaaaggctcttgaaaattcttcatgcaccctcgaactagctggttgcactccatcctctaacatcaccacaatagtagttatttataattggcgtga |
41910630 |
T |
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| Q |
210 |
agtagtagttacatat |
225 |
Q |
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|||||||||||||||| |
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| T |
41910629 |
agtagtagttacatat |
41910614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 47 - 220
Target Start/End: Complemental strand, 41928731 - 41928552
Alignment:
| Q |
47 |
tttcatcggttatctttacatgttgaggaagagcttttttcatcaatctatgcacattggcaatgggaaaggctcttgaaaattcttcttgcaccctcga |
146 |
Q |
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||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41928731 |
tttcatcggttatctttgcatgtcttggtagagcttttttcatcaatctatgcacattcgcaatgggaaaggctcttgaaaattcttcttgcaccctcga |
41928632 |
T |
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| Q |
147 |
actagctggttgcactccatcctctaacatcaccacaatagtag------ttatatataattggcgtgaagtagtagtta |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||| |
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| T |
41928631 |
actagctggttgcactccatcctctaacatcaccacaatagtagttattattatatataattggcgtgaagcagcagtta |
41928552 |
T |
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