View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18751_low_18 (Length: 227)
Name: NF18751_low_18
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18751_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 8e-88; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 24420288 - 24420086
Alignment:
| Q |
1 |
ctattaagcttccggctattatttgtnnnnnnnntcaatgaattatattcagcattgttgtggttaatttgtattcaagcttttgttaataaaaaagtct |
100 |
Q |
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| T |
24420288 |
ctattaagcttccggctattatttg-aaaaaatttcaatgaattatattcagcattgttgtggttaatttgtattcaatcttttgttaataaaaaagtct |
24420190 |
T |
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| Q |
101 |
atgctttacagtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttatctcctttagttgt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24420189 |
atgctttacagtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttttctcctttagttgt |
24420090 |
T |
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| Q |
201 |
tttt |
204 |
Q |
| |
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|||| |
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| T |
24420089 |
tttt |
24420086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 24471408 - 24471502
Alignment:
| Q |
110 |
agtgaattaagagccttattttgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttatctcctttagttgttttt |
204 |
Q |
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| T |
24471408 |
agtgaattaatagccttattttgattcaaatgcatctgtgcatgtatggtgttaattcataagtttgtgtttatttatctcctttagttgttttt |
24471502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 196
Target Start/End: Complemental strand, 24475895 - 24475730
Alignment:
| Q |
35 |
tcaatgaattatattcagcattgttgtggttaatttgtattcaagcttttgttaataaaa-aagtctatgctttacagtgaattaagagcc---ttattt |
130 |
Q |
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| T |
24475895 |
tcaaagaattatattcagcattgttctggttaatttgtatcgaagcttttgtgaataaaagaattttatacactacaatgaattaagagcctaattattt |
24475796 |
T |
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| Q |
131 |
tgattcaaatgcatctgtgcatgcatggtgttaattcataagtttgtatttatttatctcctttag |
196 |
Q |
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| T |
24475795 |
cggttcaagtgcaattgtgcatgtatggtgttaattcataagtcagtatttatcaatctcctttag |
24475730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 35 - 86
Target Start/End: Complemental strand, 24406279 - 24406228
Alignment:
| Q |
35 |
tcaatgaattatattcagcattgttgtggttaatttgtattcaagcttttgt |
86 |
Q |
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|||||||||||| |||| ||||||||||||||||||||||| |||||||||| |
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| T |
24406279 |
tcaatgaattatgttcaacattgttgtggttaatttgtatttaagcttttgt |
24406228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 72
Target Start/End: Original strand, 24471365 - 24471402
Alignment:
| Q |
35 |
tcaatgaattatattcagcattgttgtggttaatttgt |
72 |
Q |
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| T |
24471365 |
tcaatgaattatattcagcattgttgtggttaatttgt |
24471402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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