View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18751_low_2 (Length: 675)
Name: NF18751_low_2
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18751_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 251 - 657
Target Start/End: Original strand, 38234885 - 38235292
Alignment:
| Q |
251 |
agtttagtgtacacaaacgtatgattgtgtaccgattgtattgtatttt-tcatcaatatagcaatatcaaatctaagctatttaaaaatgtccaacata |
349 |
Q |
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| T |
38234885 |
agtttagtgtacacaaacgtatgattgtgtaccgattgtattgtattttttcatcaatatagcaatatcaaatctaagctatttaaaaatgtccaacata |
38234984 |
T |
|
| Q |
350 |
atcttgatccatactcactccactatgttgctccttctactcttcacttctatagccgtttaactctttccattttcaatcaacaataatttcaaaacca |
449 |
Q |
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| T |
38234985 |
atcttgatccatactcactccactatgttgctccttctactcttcacttctatagccgtttaactctttccattttcaatcaacaataatttcaaaacca |
38235084 |
T |
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| Q |
450 |
agctaatcaaattagacatgcaatatccaactcaaccttgtttcaattaccactaaaccactttcactctcttcatcatttctttcaaatgggttgttgt |
549 |
Q |
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| T |
38235085 |
agctaatcaaattaggcatgcaatatccaactcaaccttgtttcaattaccactaaaccactttcactctcttcatcatttctttcaaatgggttgttgt |
38235184 |
T |
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| Q |
550 |
atcagcaccccaaaagatgaccaaaataccctcaaaaaccaacaaaatttcacccaagaagcaaaatgcaaagttccaccaccacaatcaaaatcaccac |
649 |
Q |
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| T |
38235185 |
atcagcaccccaaaagatgaccaaaataccctcaaaaaccaacaaaatttcacccaagaagcaaaatgcaaagttccaccaccacaatcaaaatcaccac |
38235284 |
T |
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| Q |
650 |
cacatatt |
657 |
Q |
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| T |
38235285 |
cacatatt |
38235292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 45 - 189
Target Start/End: Original strand, 38234680 - 38234824
Alignment:
| Q |
45 |
tttaaccaacataagttagtacaatttataatgatttagctcatattccacggtaactttagttcaaatctcgtaagcgatgtgatgaggacataattgg |
144 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38234680 |
tttaagcaacataagttagtacaatttataatgatttagctcatattccacggtaactttagttcaaatctcgtaagcgatgtgatgaggacataattgg |
38234779 |
T |
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| Q |
145 |
tgagtaaaatgttaggacctaatgttattcgagttcaagtccttc |
189 |
Q |
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| T |
38234780 |
tgagtaaaatgttaggacctaatgttattcgagttcaagtccttc |
38234824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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