View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18751_low_22 (Length: 206)
Name: NF18751_low_22
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18751_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 24323930 - 24324106
Alignment:
| Q |
15 |
tcacaatattaatttctatccaatacgagtgaaaaggtaatcagaggagaggaaaccttcaatgtgagagaagtccaagaatgatcagtggcactgagcg |
114 |
Q |
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| T |
24323930 |
tcacaatattaatttctatccaatacgagtgaaaaagtaatcagaggaaaggaaaccttcaatgtgagagaagtccaagaatgatcagtggcattgagcg |
24324029 |
T |
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| Q |
115 |
cggagttaaggtgatcgtagttttcctgtaacaagatttaacgcaaagttagagaatttgattgtggaggaaaataa |
191 |
Q |
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| T |
24324030 |
cggagttaaggtgatcgtagttttcctgtaacaagatttaacgcaaagttagagaatttgattgtggaggaaaataa |
24324106 |
T |
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Target: chr5; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 24360554 - 24360730
Alignment:
| Q |
15 |
tcacaatattaatttctatccaatacgagtgaaaaggtaatcagaggagaggaaaccttcaatgtgagagaagtccaagaatgatcagtggcactgagcg |
114 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
24360554 |
tcacaatattaatttctatccaatacgagtgaaaaagtaatcagaggaaaggaaaccttcaatgtgagagaagtccaagaatgatcagtggcattgagcg |
24360653 |
T |
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| Q |
115 |
cggagttaaggtgatcgtagttttcctgtaacaagatttaacgcaaagttagagaatttgattgtggaggaaaataa |
191 |
Q |
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| T |
24360654 |
cggagttaaggtgatcgtagttttcctgtaacaagatttaacgcaaagttagagaatttgattgtggaggaaaataa |
24360730 |
T |
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