View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18751_low_3 (Length: 659)
Name: NF18751_low_3
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18751_low_3 |
 | |
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| [»] scaffold0006 (6 HSPs) |
| | |
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| [»] scaffold0783 (1 HSPs) |
| | |
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Alignment Details
Target: scaffold0006 (Bit Score: 423; Significance: 0; HSPs: 6)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 170 - 652
Target Start/End: Original strand, 130473 - 130955
Alignment:
| Q |
170 |
tcaccaggcagattccatcatctataccaaccctcaaagaacatcttttcgatgttgtaagtttctggtctatgttgtaactttggagtactttattcta |
269 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||| |
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|
| T |
130473 |
tcaccaggcagattctatcatctataccaaccctcaaagaacatcttttcaatgttgtaagtttctggtctatgttgtccctttggtgtagtttattcta |
130572 |
T |
|
| Q |
270 |
ttgaactaaacaatgtaattgtttgtacttgtcaacattcaataataaaataattattcattgtcaatatttatctcatatcatacataggatttcaaca |
369 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| |
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|
| T |
130573 |
ttgaactcaacaatgtaatcgtttgtacttgtcgacatgcaataataaaatcattattcattttcaatatttatctcatatcatacttaggatttcaaca |
130672 |
T |
|
| Q |
370 |
aggaattatggggatttcataagatttcttgcaaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgaga |
469 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
130673 |
aggaatgatggggatttcataagatttcttgcaaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgaga |
130772 |
T |
|
| Q |
470 |
aattgatcgaaagagcggtggtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgaca |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
130773 |
aattgatcgaaagagcggtggtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgaca |
130872 |
T |
|
| Q |
570 |
cctgaaccgttgggaagcatcaatctcctctacgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgacta |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
130873 |
cctgaaccgttgggaagcatcaatctcctctatgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgacta |
130955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 402 - 600
Target Start/End: Original strand, 81993 - 82193
Alignment:
| Q |
402 |
aaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtggtgatggtttcg |
501 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||| ||||||||||| || |
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|
| T |
81993 |
aaaacaagttaataagtgccttatattagattttaagaaaatttggcacttatcaggtggttgcgagaaattgatcgaaagagcgttggtgatggttacg |
82092 |
T |
|
| Q |
502 |
aaattcta--acgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctgaaccgttgggaagcatcaatctcctc |
599 |
Q |
| |
|
|||||| | | || | |||||| || || |||||||| ||||||||||||||||||||||||| ||| ||||||||| ||||| ||||||||||||| |
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|
| T |
82093 |
aaattcaaatatgaatcggtggcaaaatccgatccctctggttccatggaaggaagcgaatcctccaacagctgaaccgtggggaatcatcaatctcctc |
82192 |
T |
|
| Q |
600 |
t |
600 |
Q |
| |
|
| |
|
|
| T |
82193 |
t |
82193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 130378 - 130471
Alignment:
| Q |
18 |
agtgtaaagacaatgagtcagcaaaccttagtgaaaagtgcttcattatcctactcaagaatttacctcttaatcttaaggtgcgaacaagttt |
111 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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|
| T |
130378 |
agtgtaaagacaatgagtcaggcaaccttactgaaaagtgcttcattatcctactcaagaatttacctcttaatcttaaggagccaacaagttt |
130471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 145
Target Start/End: Original strand, 81914 - 81982
Alignment:
| Q |
77 |
aatttacctcttaatcttaaggtgcgaacaagtttatcccattccttgctcttttagtgcttcttattt |
145 |
Q |
| |
|
|||||| ||||||||||||||| || |||| ||| ||| ||||| ||||||||||||||||||||||| |
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|
| T |
81914 |
aatttaactcttaatcttaaggagccaacagatttttcctattccatgctcttttagtgcttcttattt |
81982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 79857 - 79744
Alignment:
| Q |
43 |
ccttagtgaaaagtgcttcattatcctactcaagaatttacctcttaatcttaaggtgcgaacaagtttatcccattccttgctcttttagtgcttctta |
142 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||||||| |||||| ||||||| || || |||||| | | ||||||| |||| || | ||||||| |
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|
| T |
79857 |
ccttagtgacgaatgcttcattatcctactctagaatttaaatcttaaacttaaggagccaataagttttttctattcctttctctatttgcacttctta |
79758 |
T |
|
| Q |
143 |
tttttaacaaccct |
156 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
79757 |
ttttgaaaaaccct |
79744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 125526 - 125490
Alignment:
| Q |
43 |
ccttagtgaaaagtgcttcattatcctactcaagaat |
79 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
125526 |
ccttactgaaaagtgcttcattatcctactaaagaat |
125490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 423; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 170 - 652
Target Start/End: Original strand, 13601816 - 13602298
Alignment:
| Q |
170 |
tcaccaggcagattccatcatctataccaaccctcaaagaacatcttttcgatgttgtaagtttctggtctatgttgtaactttggagtactttattcta |
269 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
13601816 |
tcaccaggcagattctatcatctataccaaccctcaaagaacatcttttcaatgttgtaagtttctggtctatgttgtccctttggtgtagtttattcta |
13601915 |
T |
|
| Q |
270 |
ttgaactaaacaatgtaattgtttgtacttgtcaacattcaataataaaataattattcattgtcaatatttatctcatatcatacataggatttcaaca |
369 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13601916 |
ttgaactcaacaatgtaatcgtttgtacttgtcgacatgcaataataaaatcattattcattttcaatatttatctcatatcatacttaggatttcaaca |
13602015 |
T |
|
| Q |
370 |
aggaattatggggatttcataagatttcttgcaaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgaga |
469 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13602016 |
aggaatgatggggatttcataagatttcttgcaaaacaagttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgaga |
13602115 |
T |
|
| Q |
470 |
aattgatcgaaagagcggtggtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgaca |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13602116 |
aattgatcgaaagagcggtggtgatggtttcgaaattctaacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgaca |
13602215 |
T |
|
| Q |
570 |
cctgaaccgttgggaagcatcaatctcctctacgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgacta |
652 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13602216 |
cctgaaccgttgggaagcatcaatctcctctatgcaaaatttccttatcatatatcttcttcagaaaaacaataaattgacta |
13602298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 22 - 573
Target Start/End: Complemental strand, 19153639 - 19153081
Alignment:
| Q |
22 |
taaagacaatgagtcagcaaaccttagtgaaaagtgcttcattatcctactcaagaatttacctcttaatcttaaggtgcgaacaagtttatcccattcc |
121 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||| | | ||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
19153639 |
taaagactatgagtcagcatgcctaagtgaaaggcg-ttcattatcctactcaacaatttacctcttaatcttaaggagcgaacaagtttttcccattcc |
19153541 |
T |
|
| Q |
122 |
ttgctcttttagtgcttcttatttttaacaacccttgtgttatttacctcaccaggcagattccatcatctataccaaccctcaaagaacatcttttcga |
221 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | |
|
|
| T |
19153540 |
ttgctcttttagtgcttcttattttgaaaaacccttgtg-taattacctcaccaggcagattccatcttctataccaaccctcaaagaacatctcttcaa |
19153442 |
T |
|
| Q |
222 |
tgttgtaagtttctggtctatgttgtaactttgg--agtactttattctattgaactaaacaatgtaattgtttgtacttgtcaacattcaataataaaa |
319 |
Q |
| |
|
||||||||||||||||||| |||| ||| || || |||| |||||||||| ||||| ||||||||| |||||||||||||| || ||| ||||||| |
|
|
| T |
19153441 |
tgttgtaagtttctggtctttgttttaatttaggatagtagtttattctatggaactccacaatgtaaccatttgtacttgtcaaaatgcaagaataaaa |
19153342 |
T |
|
| Q |
320 |
taa------------ttattcattgtcaatatttatctcatatcatacataggatttcaacaaggaattatggggatttcataagatttcttgcaaaaca |
407 |
Q |
| |
|
||| |||||||||| ||||||||||| || |||||||||||||||||||||||| ||||||||||| || ||||||| ||||| | |
|
|
| T |
19153341 |
taatattaacaatttttattcattgccaatatttatc-----tcctacataggatttcaacaaggaattgtggggatttcacaatatttctttcaaaaga |
19153247 |
T |
|
| Q |
408 |
agttaataactgccttatattggattttaattaaacttggcacttattaagtggttgcgagaaattgatcgaaagagcggtggtgatggtttcgaaattc |
507 |
Q |
| |
|
||||||||| | |||||||||||||||| |||||||||| ||||| | |||||||| |||||||||| ||||||||||||| || |||| | ||||| |
|
|
| T |
19153246 |
agttaataagcgttttatattggattttaagtaaacttggcgcttatcaggtggttgccagaaattgattgaaagagcggtggcgacggttacaaaattt |
19153147 |
T |
|
| Q |
508 |
taacgaggcagtggcagaacccaatccctctagttccatggaaggaagcgaatcctctgacacctg |
573 |
Q |
| |
|
|| ||| |||| ||| || ||| ||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
19153146 |
gaatgagttggtggtggaatccgatctctcatgttccatggaaggaattgaatcctccgacacctg |
19153081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 13601721 - 13601814
Alignment:
| Q |
18 |
agtgtaaagacaatgagtcagcaaaccttagtgaaaagtgcttcattatcctactcaagaatttacctcttaatcttaaggtgcgaacaagttt |
111 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
13601721 |
agtgtaaagacaatgagtcaggcaaccttactgaaaagtgcttcattatcctactcaagaatttacctcttaatcttaaggagccaacaagttt |
13601814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 128
Target Start/End: Complemental strand, 13626854 - 13626769
Alignment:
| Q |
43 |
ccttagtgaaaagtgcttcattatcctactcaagaatttacctcttaatcttaaggtgcgaacaagtttatcccattccttgctct |
128 |
Q |
| |
|
||||| |||| ||||||||||||||||||| |||||||||| ||| || ||||||| || ||||||||| ||| ||||||||||| |
|
|
| T |
13626854 |
ccttactgaagagtgcttcattatcctactaaagaatttacttctgaaacttaaggagccaacaagtttttccttttccttgctct |
13626769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 13486189 - 13486119
Alignment:
| Q |
18 |
agtgtaaagacaatgagtcagcaaaccttagtgaaaagtgcttcattatcctactcaagaatttacctctt |
88 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||| |||||| |||||||||||| | ||| ||||||| |
|
|
| T |
13486189 |
agtgtaaagactatgagtcagcaagccttagtgaagagtgctatgttatcctactcaggcattcacctctt |
13486119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0783 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0783
Description:
Target: scaffold0783; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 5419 - 5306
Alignment:
| Q |
43 |
ccttagtgaaaagtgcttcattatcctactcaagaatttacctcttaatcttaaggtgcgaacaagtttatcccattccttgctcttttagtgcttctta |
142 |
Q |
| |
|
||||||||| | |||||||||||||||||| |||||||| |||||| ||||||| || || |||||| | ||||||||| |||| || | ||||||| |
|
|
| T |
5419 |
ccttagtgacgaatgcttcattatcctactctagaatttaaatcttaaacttaaggagccaataagttttttccattcctttctctatttgcacttctta |
5320 |
T |
|
| Q |
143 |
tttttaacaaccct |
156 |
Q |
| |
|
|||| || |||||| |
|
|
| T |
5319 |
ttttgaaaaaccct |
5306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 21770352 - 21770316
Alignment:
| Q |
43 |
ccttagtgaaaagtgcttcattatcctactcaagaat |
79 |
Q |
| |
|
||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
21770352 |
ccttactgaaaagtgcttcattatcctactaaagaat |
21770316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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