View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18751_low_5 (Length: 548)
Name: NF18751_low_5
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18751_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 10 - 532
Target Start/End: Original strand, 36395759 - 36396282
Alignment:
| Q |
10 |
attatactcattcattttttaagaaagattattagctccaacctcctagtatggttaatcaacatgttataattttgagacattcatatactattttaac |
109 |
Q |
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| T |
36395759 |
attatactcattcattttttaagaaagattattagctccaacctcctagtatggttaatcaacatgttataattttgagacattcatatactattttaac |
36395858 |
T |
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| Q |
110 |
aatgcttgagaggctaaatgaaatttgctcaacgtactccaataaaatttctttatctttttgaaagtgttcctcttgaaaatcccctactagctcctta |
209 |
Q |
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| T |
36395859 |
aatgcttgagaggctaaatgaaatttgctcaaagtactccaataaaatttctttatctttttgaaagtgttccttttgaaaatcccctactagctcctta |
36395958 |
T |
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| Q |
210 |
atctaatggcctgtatatcgtaaagaattt-gattaataatgtcctgttttgtctgtgtatcgtatagaattttgattaataatgtcctgttctgtctgt |
308 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36395959 |
atctaatggcctgtatatcgtaaataattttgattaataatgtcctgttttgtctgtgtatcgtatagaattttgattaataatgtcctgttctgtctgt |
36396058 |
T |
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| Q |
309 |
atatcgtttagaattttgactaataatggtctgtgctcttgtattgctatgtgtgaaggattgtttgatagagggtaatacaggaaatggtcccaatgag |
408 |
Q |
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| T |
36396059 |
atatcgtatagaattttgactaataatggtctgtgctcttgtattgctatgtgtgaaggattgtttgatagagggtaatccaggaaatggtcccaatgag |
36396158 |
T |
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| Q |
409 |
gcatcggcttctggttgctcaaacagaacccttctcctaccttgctcttctaacatggatgtgtccgatgatgcaccattacctagtcaggctgttggca |
508 |
Q |
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| T |
36396159 |
gcatcggcttctggttgctcaaacagaacccttctcctaccttgctcttctaacatggatgcgtccgatgatgcaccattacctagtcaggctgttggca |
36396258 |
T |
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| Q |
509 |
ctatatcagctgccagtgaaactg |
532 |
Q |
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| T |
36396259 |
ctatatcagctgccagtgaaactg |
36396282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 439 - 532
Target Start/End: Complemental strand, 2944254 - 2944157
Alignment:
| Q |
439 |
cttctcctacctt----gctcttctaacatggatgtgtccgatgatgcaccattacctagtcaggctgttggcactatatcagctgccagtgaaactg |
532 |
Q |
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| T |
2944254 |
cttctcctaccttgctagctcttctaacatggacgtgtccgatgatgcaccattacctagtcaggctgttggcactatatcagcagccagtgaaactg |
2944157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 10781749 - 10781701
Alignment:
| Q |
344 |
ctcttgtattgctatgtgtgaaggattgtttgatagagggtaatacagg |
392 |
Q |
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| T |
10781749 |
ctcttgtattcctatgtgtgaaggattgtttgatagagggtaatccagg |
10781701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 46
Target Start/End: Complemental strand, 33986924 - 33986888
Alignment:
| Q |
10 |
attatactcattcattttttaagaaagattattagct |
46 |
Q |
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| T |
33986924 |
attatactatttcattttttaagaaagattattagct |
33986888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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