View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18751_low_6 (Length: 456)

Name: NF18751_low_6
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18751_low_6
NF18751_low_6
[»] chr4 (17 HSPs)
chr4 (232-440)||(40184483-40184691)
chr4 (157-231)||(40184339-40184413)
chr4 (1-72)||(13267476-13267549)
chr4 (181-224)||(54512273-54512316)
chr4 (9-73)||(19720647-19720713)
chr4 (157-210)||(20281434-20281487)
chr4 (22-78)||(42178068-42178127)
chr4 (5-77)||(51377295-51377369)
chr4 (5-72)||(3222989-3223058)
chr4 (9-72)||(5208333-5208398)
chr4 (7-74)||(8680939-8681008)
chr4 (22-74)||(13389470-13389525)
chr4 (9-72)||(24235320-24235385)
chr4 (5-72)||(27001411-27001480)
chr4 (9-72)||(34259815-34259880)
chr4 (1-72)||(53662426-53662499)
chr4 (5-72)||(55268003-55268072)
[»] chr8 (8 HSPs)
chr8 (124-231)||(44251262-44251368)
chr8 (125-217)||(3234656-3234747)
chr8 (5-72)||(30927933-30928002)
chr8 (1-74)||(7129531-7129606)
chr8 (5-72)||(1065417-1065486)
chr8 (181-217)||(3813253-3813289)
chr8 (5-72)||(41273515-41273584)
chr8 (5-72)||(41293723-41293792)
[»] chr3 (16 HSPs)
chr3 (123-231)||(4549490-4549597)
chr3 (157-231)||(860856-860930)
chr3 (124-209)||(23308596-23308680)
chr3 (5-73)||(11327107-11327177)
chr3 (3-74)||(2482674-2482747)
chr3 (5-72)||(32931920-32931989)
chr3 (27-73)||(43441671-43441720)
chr3 (6-72)||(53932394-53932462)
chr3 (3-72)||(27162469-27162540)
chr3 (5-73)||(50879594-50879664)
chr3 (9-72)||(108431-108496)
chr3 (21-72)||(5398918-5398972)
chr3 (5-72)||(8254027-8254096)
chr3 (123-219)||(18365771-18365866)
chr3 (5-72)||(20714243-20714312)
chr3 (9-72)||(36818956-36819021)
[»] chr1 (15 HSPs)
chr1 (148-231)||(51043020-51043103)
chr1 (154-219)||(36632941-36633006)
chr1 (123-231)||(16299831-16299938)
chr1 (123-231)||(17063235-17063342)
chr1 (148-211)||(36632866-36632929)
chr1 (125-231)||(7015910-7016015)
chr1 (148-217)||(17064061-17064130)
chr1 (170-231)||(41463920-41463981)
chr1 (125-217)||(9026214-9026304)
chr1 (123-226)||(10556259-10556360)
chr1 (5-74)||(25995458-25995529)
chr1 (157-231)||(28033918-28033992)
chr1 (5-73)||(13813557-13813627)
chr1 (9-72)||(11097890-11097955)
chr1 (5-72)||(42256460-42256529)
[»] chr2 (17 HSPs)
chr2 (148-231)||(18318328-18318411)
chr2 (5-72)||(34144553-34144622)
chr2 (1-72)||(36909841-36909914)
chr2 (1-72)||(44484654-44484727)
chr2 (5-72)||(35171228-35171297)
chr2 (9-72)||(36435681-36435746)
chr2 (169-217)||(43305270-43305318)
chr2 (9-74)||(37257447-37257516)
chr2 (5-72)||(3196089-3196158)
chr2 (7-86)||(9695065-9695146)
chr2 (9-72)||(15283256-15283321)
chr2 (21-72)||(20534068-20534122)
chr2 (5-72)||(27307233-27307302)
chr2 (1-70)||(29611925-29611993)
chr2 (1-49)||(36383488-36383535)
chr2 (125-217)||(38623655-38623745)
chr2 (1-49)||(44085300-44085347)
[»] chr6 (11 HSPs)
chr6 (123-226)||(31636873-31636975)
chr6 (170-231)||(5583584-5583645)
chr6 (7-72)||(3339503-3339570)
chr6 (9-74)||(25995440-25995507)
chr6 (1-73)||(12500025-12500099)
chr6 (1-73)||(12507354-12507428)
chr6 (1-73)||(12508802-12508876)
chr6 (3-44)||(21210290-21210330)
chr6 (5-72)||(2056783-2056852)
chr6 (1-49)||(12501500-12501547)
chr6 (9-72)||(17417241-17417306)
[»] chr5 (12 HSPs)
chr5 (124-211)||(1422660-1422746)
chr5 (148-231)||(19264704-19264787)
chr5 (5-74)||(9599730-9599801)
chr5 (5-73)||(30574379-30574449)
chr5 (5-72)||(9594478-9594547)
chr5 (1-72)||(14914372-14914445)
chr5 (7-74)||(39788710-39788779)
chr5 (1-73)||(22920490-22920564)
chr5 (9-72)||(3634494-3634559)
chr5 (1-49)||(28501643-28501690)
chr5 (3-47)||(32379929-32379972)
chr5 (5-72)||(32634708-32634777)
[»] scaffold0026 (1 HSPs)
scaffold0026 (9-73)||(113624-113690)
[»] chr7 (7 HSPs)
chr7 (5-73)||(33050182-33050252)
chr7 (9-72)||(13437198-13437263)
chr7 (6-73)||(2347062-2347131)
chr7 (5-72)||(30864419-30864488)
chr7 (24-73)||(42118715-42118766)
chr7 (9-72)||(43079638-43079703)
chr7 (1-72)||(44511139-44511212)
[»] scaffold0011 (1 HSPs)
scaffold0011 (5-80)||(18587-18664)
[»] scaffold0004 (1 HSPs)
scaffold0004 (5-72)||(249144-249213)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 232 - 440
Target Start/End: Original strand, 40184483 - 40184691
Alignment:
Q  232 catgactcttgtattaattagctagtccgctattgtttacaagaagataatcacaagggaaaaagcatggtgaatggaaagaaagcaaatttgaccaagg 331  Q
    |||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40184483 catgacccttatattaattagctagtccgctattgtttacaagaacataatcacaagggaaaaagcatggtgaatggaaagaaagcaaatttgaccaagg 40184582  T
Q  332 caatgtataagagctctttatttatctttaacaaaatgcttcaatcttggggcaaaatgttaattggtatctactctctagtgcttgttgggtggatata 431  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  40184583 caatgtataagagctctttatttatctttaacaaaatgcttcaatcttggggcaaaatgttaattggtctctactctctagtgcttgttgggtggatgta 40184682  T
Q  432 gtcatgatt 440  Q
    |||||||||    
T  40184683 gtcatgatt 40184691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 40184339 - 40184413
Alignment:
Q  157 caaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 231  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||| ||||    
T  40184339 caaaagaagaaatatttaatgcaatgattacacaactttgaatacatatattatcctttttaagttattatttaa 40184413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 13267476 - 13267549
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 72  Q
    |||| |||||||||||| |||||||||||||| | ||||| |||||||   |||||||| |||||||||||||||    
T  13267476 agaaaatcatgtgagta-tgtgagagaaagttttccaaaatttgtcacaaaatggttgtacaaatatcatttctc 13267549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 181 - 224
Target Start/End: Original strand, 54512273 - 54512316
Alignment:
Q  181 tgattacacaactttgaatgcatatattaccctttttaggtcat 224  Q
    |||||||||||||||||||| | | |||||||||||||||||||    
T  54512273 tgattacacaactttgaatgtaaacattaccctttttaggtcat 54512316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 19720647 - 19720713
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 73  Q
    |||||||||| | ||||||||||| ||||||| ||||||||   ||| ||||||||||||||||||||    
T  19720647 atgtgagtaa-gagagagaaagttattcaaaagttgtcacaaaatggatgtgcaaatatcatttctca 19720713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 20281434 - 20281487
Alignment:
Q  157 caaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattac 210  Q
    ||||||| |||| |||||||||| ||||||||||| ||| |||||| |||||||    
T  20281434 caaaagatgaaacatttaatgcattgattacacaattttaaatgcaaatattac 20281487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 42178068 - 42178127
Alignment:
Q  22 gagagaaagttgttcaaaaattgtcacat---ggttgtgcaaatatcatttctcaacaaa 78  Q
    |||||||| || |||||||||||||||||   | |||| |||||||||||||||||||||    
T  42178068 gagagaaaattattcaaaaattgtcacataatgattgtacaaatatcatttctcaacaaa 42178127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 51377295 - 51377369
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaacaa 77  Q
    ||||||||||||| || ||||||||||||  ||||| ||||||||   ||||||| ||||||||||||||| ||||    
T  51377295 catcatgtgagta-tgagagagaaagttggacaaaagttgtcacaaattggttgtacaaatatcatttctctacaa 51377369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 3223058 - 3222989
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  3223058 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 3222989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 5208333 - 5208398
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  5208333 atgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 5208398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 8681008 - 8680939
Alignment:
Q  7 tcatgtgagtaatgtgagagaaagttgttcaaaaattgtcacat---ggttgtgcaaatatcatttctcaa 74  Q
    ||||||||||| || ||||||||||||| |||||| | ||||||   |||||| |||||||||||||||||    
T  8681008 tcatgtgagta-tgagagagaaagttgtccaaaaaatatcacataatggttgtacaaatatcatttctcaa 8680939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 13389470 - 13389525
Alignment:
Q  22 gagagaaagttgtt-caaaaattgtcac--atggttgtgcaaatatcatttctcaa 74  Q
    |||||||||||||  |||||||||||||  |||||||| |||||||||||||||||    
T  13389470 gagagaaagttgtcgcaaaaattgtcaccaatggttgttcaaatatcatttctcaa 13389525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 24235385 - 24235320
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||| || ||||||||||||| ||||||||||||||   || |||| |||||||||||||||    
T  24235385 atgtgagta-tgagagagaaagttgtacaaaaattgtcacaaattgattgtacaaatatcatttctc 24235320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 27001411 - 27001480
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| || || ||||||||   ||||||| |||||||||||||||    
T  27001411 catcatgtgagta-tgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctc 27001480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 34259880 - 34259815
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||| || ||||||||||||||||| | ||||||||   ||||||| |||||||||||||||    
T  34259880 atgtgagta-tgagagagaaagttgttcaacagttgtcacaaaatggttgtacaaatatcatttctc 34259815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 53662426 - 53662499
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 72  Q
    |||||||||||||| || || ||||||||||||| |||||||||| ||   || ||||| |||||||||||||||    
T  53662426 agaacatcatgtgaata-tgagagagaaagttgtacaaaaattgttacaaaatagttgtacaaatatcatttctc 53662499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 55268003 - 55268072
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || |||| |||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  55268003 catcatgtgagta-tgagagataaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 55268072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 124 - 231
Target Start/End: Complemental strand, 44251368 - 44251262
Alignment:
Q  124 ggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtca 223  Q
    ||||||||||| |||||||| || ||||||| ||||||||||||| |||||||||| ||||||||||||||||||| || ||||||   ||||| |||||    
T  44251368 ggttaaggaagccaaaagagaaa-attttaagccaaaagaggaaacatttaatgcattgattacacaactttgaatacaaatattatattttttgggtca 44251270  T
Q  224 ttagttaa 231  Q
    ||| ||||    
T  44251269 ttatttaa 44251262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 3234656 - 3234747
Alignment:
Q  125 gttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 217  Q
    ||||||||||||||||||| || | ||||| ||||| || |||   |||||| || ||||||||||| |||||||||| ||||||||||||||    
T  3234656 gttaaggaagtcaaaagaggaa-actttaagccaaatgaagaagcctttaattcattgattacacaattttgaatgcaaatattacccttttt 3234747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 30927933 - 30928002
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    |||||| |||||| || ||||||||||||| ||||||||||||||   ||||||| |||||||||||||||    
T  30927933 catcatatgagta-tgagagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcatttctc 30928002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 7129606 - 7129531
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctcaa 74  Q
    |||| |||||||||||| |||||||||||||||| ||||| |||||||   |||||||| ||||||| |||| ||||    
T  7129606 agaaaatcatgtgagta-tgtgagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatattatttatcaa 7129531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 1065486 - 1065417
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| || || ||||||||   ||||||| |||||||||||||||    
T  1065486 catcatgtgagta-tgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctc 1065417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 3813289 - 3813253
Alignment:
Q  181 tgattacacaactttgaatgcatatattacccttttt 217  Q
    |||||||||||||||||||||| |||||||| |||||    
T  3813289 tgattacacaactttgaatgcaaatattaccattttt 3813253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 41273584 - 41273515
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  41273584 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattgtttgtacaaatatcatttctc 41273515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 41293723 - 41293792
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   |||||||  ||||||||||||||    
T  41293723 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtaaaaatatcatttctc 41293792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 4549490 - 4549597
Alignment:
Q  123 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtc 222  Q
    ||||||||||||||||||||| || ||||||| | ||||||| || |||| |||||| | || ||||||||||||||||| |||||| ||||||| ||||    
T  4549490 tggttaaggaagtcaaaagagaaa-attttaagctaaaagagaaagtattcaatgcattaataacacaactttgaatgcaaatattaacctttttgggtc 4549588  T
Q  223 attagttaa 231  Q
    |||| ||||    
T  4549589 attatttaa 4549597  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 157 - 231
Target Start/End: Original strand, 860856 - 860930
Alignment:
Q  157 caaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 231  Q
    |||||||| |||||||||||  | | |||||||||||||||||||| | |||||| |||||||||||||| ||||    
T  860856 caaaagagaaaatatttaatatatttattacacaactttgaatgcaaacattaccatttttaggtcattatttaa 860930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 209
Target Start/End: Complemental strand, 23308680 - 23308596
Alignment:
Q  124 ggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatatta 209  Q
    |||||||||||| ||||||  |||||||| |  ||||||||||| ||||||||||| ||||||||||| |||||||| | ||||||    
T  23308680 ggttaaggaagttaaaagat-aatatttttagtcaaaagaggaagtatttaatgcattgattacacaattttgaatgtaaatatta 23308596  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 11327177 - 11327107
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 73  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| ||||||||||||||||    
T  11327177 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctca 11327107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 2482674 - 2482747
Alignment:
Q  3 aacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctcaa 74  Q
    |||||||||||| || || ||||||||||||||||||| |||||||   |||| ||| |||||||||||||||||    
T  2482674 aacatcatgtgatta-tgagagagaaagttgttcaaaagttgtcacaaaatggatgtacaaatatcatttctcaa 2482747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 32931920 - 32931989
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  32931920 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 32931989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 43441720 - 43441671
Alignment:
Q  27 aaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctca 73  Q
    ||||||||||||||||||||||   |||||||| ||||||||||||||||    
T  43441720 aaagttgttcaaaaattgtcacataatggttgtacaaatatcatttctca 43441671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 53932394 - 53932462
Alignment:
Q  6 atcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 72  Q
    |||||||||||| || ||| ||||||||| |||||||||||||   |||||||| |||||||||||||||    
T  53932394 atcatgtgagta-tgagagtgaaagttgtccaaaaattgtcacaaaatggttgtacaaatatcatttctc 53932462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 3 - 72
Target Start/End: Original strand, 27162469 - 27162540
Alignment:
Q  3 aacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 72  Q
    ||||||||||||||| || ||||||||||||||||||| |||| ||   |||||||| ||||||||| |||||    
T  27162469 aacatcatgtgagta-tgagagagaaagttgttcaaaagttgttacaaaatggttgtacaaatatcacttctc 27162540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 50879664 - 50879594
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 73  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   | ||||| ||||||||||||||||    
T  50879664 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaatttagttgtacaaatatcatttctca 50879594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 108496 - 108431
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||| || |||||||||||||  |||||||||||||   ||||||| |||||||||||||||    
T  108496 atgtgagta-tgagagagaaagttgtcaaaaaattgtcacaaagtggttgtacaaatatcatttctc 108431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 5398972 - 5398918
Alignment:
Q  21 tgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||||  |||||||||||||   ||||||| |||||||||||||||    
T  5398972 tgagagaaagttgtcaaaaaattgtcacaaagtggttgtacaaatatcatttctc 5398918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 8254096 - 8254027
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| | ||| ||||||||   ||||||| |||||||||||||||    
T  8254096 catcatgtgagta-tgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctc 8254027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 123 - 219
Target Start/End: Original strand, 18365771 - 18365866
Alignment:
Q  123 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttag 219  Q
    |||||||||||| |||||||| || |||| ||  |||||||| ||   ||||||||| | |||||| ||||||||| | | ||||||||||||||||    
T  18365771 tggttaaggaagccaaaagaggaaaattt-aagtcaaaagagaaagcttttaatgcatttattacataactttgaaggtaaatattaccctttttag 18365866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 20714312 - 20714243
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| || || ||||||||   ||||||| |||||||||||||||    
T  20714312 catcatgtgagta-tgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctc 20714243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 36819021 - 36818956
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  36819021 atgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 36818956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 148 - 231
Target Start/End: Complemental strand, 51043103 - 51043020
Alignment:
Q  148 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 231  Q
    |||||||  ||||||||||| ||||||||||| |||||||||||||||||||  | |||||||||||||||||| |||| ||||    
T  51043103 attttaagtcaaaagaggaagtatttaatgcattgattacacaactttgaatataaatattaccctttttaggttattatttaa 51043020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 154 - 219
Target Start/End: Complemental strand, 36633006 - 36632941
Alignment:
Q  154 aaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttag 219  Q
    ||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||||||| ||||    
T  36633006 aaccaaaagaggaagcatttaatgcattgattacacaactttgaatgcaaatattacccttattag 36632941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 123 - 231
Target Start/End: Original strand, 16299831 - 16299938
Alignment:
Q  123 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtc 222  Q
    ||||||||||||  ||| ||| || ||||||| |||||| || || |||||||| || ||||||||||| |||||||||| |||||||||||||| |||     
T  16299831 tggttaaggaagctaaacgaggaa-attttaagccaaaaaagaaagtatttaattcattgattacacaattttgaatgcagatattaccctttttgggta 16299929  T
Q  223 attagttaa 231  Q
    |||| ||||    
T  16299930 attatttaa 16299938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 231
Target Start/End: Complemental strand, 17063342 - 17063235
Alignment:
Q  123 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtc 222  Q
    |||||||| |||||||||||| || |||||||  ||||||| |||  |||||||||| |||||  ||||||| ||||| | ||||||| ||| |||||||    
T  17063342 tggttaagtaagtcaaaagaggaa-attttaagtcaaaagatgaagcatttaatgcattgattctacaacttcgaatgtaaatattactcttattaggtc 17063244  T
Q  223 attagttaa 231  Q
    |||| ||||    
T  17063243 attatttaa 17063235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 211
Target Start/End: Original strand, 36632866 - 36632929
Alignment:
Q  148 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacc 211  Q
    ||||||| | |||||| |||  |||||||||| |||||||||||||||||||||| ||||||||    
T  36632866 attttaagcaaaaagatgaatcatttaatgcattgattacacaactttgaatgcaaatattacc 36632929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 125 - 231
Target Start/End: Original strand, 7015910 - 7016015
Alignment:
Q  125 gttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcat 224  Q
    |||||||||| |||||||| ||  ||||||  | |||||||||  |||||||||| ||||||||||| |||||||||| ||||| || ||||  ||||||    
T  7015910 gttaaggaagccaaaagaggaag-ttttaagtctaaagaggaagcatttaatgcattgattacacaattttgaatgcaaatatttcctttttggggtcat 7016008  T
Q  225 tagttaa 231  Q
    || ||||    
T  7016009 tatttaa 7016015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 217
Target Start/End: Original strand, 17064061 - 17064130
Alignment:
Q  148 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 217  Q
    ||||||| ||||||||  |||||||||||||| |||||||  |||||| |||||| |||||| |||||||    
T  17064061 attttaagccaaaagaaaaaatatttaatgcattgattactaaactttaaatgcaaatattatccttttt 17064130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 231
Target Start/End: Original strand, 41463920 - 41463981
Alignment:
Q  170 atttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 231  Q
    |||||||||| |||||||| ||||||||||||| |||||| ||||||| | |||||| ||||    
T  41463920 atttaatgcattgattacataactttgaatgcaaatattatcctttttggatcattatttaa 41463981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 217
Target Start/End: Original strand, 9026214 - 9026304
Alignment:
Q  125 gttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 217  Q
    ||||| ||||||||||||| || ||||||| |||||||| |||  |||||||||| ||||||||||| ||| |||| | |||||||| |||||    
T  9026214 gttaatgaagtcaaaagagaaa-attttaagccaaaagatgaagcatttaatgcattgattacacaa-tttaaatgtaaatattacctttttt 9026304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 10556259 - 10556360
Alignment:
Q  123 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtc 222  Q
    ||||||||||||||||||||  || |||||||  |||||||||||  |||||||| | || || || ||||||||||||| || ||||||||||  ||||    
T  10556259 tggttaaggaagtcaaaagaagaa-attttaagtcaaaagaggaagcatttaatgtattggttgcataactttgaatgcagat-ttacccttttggggtc 10556356  T
Q  223 atta 226  Q
    ||||    
T  10556357 atta 10556360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 25995529 - 25995458
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaa 74  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||||    
T  25995529 catcatgtgagta-tgagagagaaagttgtacaaaacttgtcacaaattgattgtacaaatatcatttctcaa 25995458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 157 - 231
Target Start/End: Complemental strand, 28033992 - 28033918
Alignment:
Q  157 caaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 231  Q
    |||||||||||  ||||||| || ||||||||||||||| |||||| ||||| | ||||||  ||||||| ||||    
T  28033992 caaaagaggaagcatttaatacattgattacacaactttaaatgcaaatattgctctttttgagtcattatttaa 28033918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 13813627 - 13813557
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 73  Q
    ||||||||||||| || ||||||||||||| || || ||||||||   ||||||| ||||||||||||||||    
T  13813627 catcatgtgagta-tgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctca 13813557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 11097890 - 11097955
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 72  Q
    ||||||||| || ||||||||||||||||||| |||||||   |||| ||| |||||||||||||||    
T  11097890 atgtgagta-tgagagagaaagttgttcaaaagttgtcacaaaatggatgtacaaatatcatttctc 11097955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 42256529 - 42256460
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| | ||| ||||||||   ||||||| |||||||||||||||    
T  42256529 catcatgtgagta-tgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctc 42256460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 18318328 - 18318411
Alignment:
Q  148 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 231  Q
    ||||||| ||||||||  ||  |||||||||| |||||||||||||||||||||| ||||||| |||||| ||| |||| ||||    
T  18318328 attttaagccaaaagataaagcatttaatgcattgattacacaactttgaatgcaaatattactctttttgggtaattatttaa 18318411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 34144553 - 34144622
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| ||||||||||||||   ||||||| |||||||||||||||    
T  34144553 catcatgtgagta-tgagagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcatttctc 34144622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 36909841 - 36909914
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 72  Q
    |||| |||||||||||| |||||||||||||||| ||||| |||||||   |||||||| |||||||||||||||    
T  36909841 agaaaatcatgtgagta-tgtgagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatatcatttctc 36909914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 44484654 - 44484727
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 72  Q
    ||||||||||||||||| || ||||||||||||| |||||||||| ||   |||||||| |||||||||||||||    
T  44484654 agaacatcatgtgagta-tgagagagaaagttgtacaaaaattgttacaaaatggttgtacaaatatcatttctc 44484727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 35171228 - 35171297
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| | |||||||||||   |||||||| |||||||||||||||    
T  35171228 catcatgtgagta-tgagagagaaagttgtaccaaaattgtcacaaaatggttgtacaaatatcatttctc 35171297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 36435746 - 36435681
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||| ||||||||||||||||| |||| ||||||||   ||||||| |||||||||||||||    
T  36435746 atgtgagta-tgtgagagaaagttgttaaaaagttgtcacaaagtggttgtacaaatatcatttctc 36435681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 43305318 - 43305270
Alignment:
Q  169 tatttaatgcaatgattacacaactttgaatgcatatattacccttttt 217  Q
    ||||||||||| ||||||||||||||| |||||| |||||| |||||||    
T  43305318 tatttaatgcattgattacacaactttaaatgcaaatattatccttttt 43305270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 37257516 - 37257447
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgtt-caaaaattgtcac---atggttgtgcaaatatcatttctcaa 74  Q
    |||||||||||| |||||||||||||| ||||| |||||||   |||| ||| |||||||||||||||||    
T  37257516 atgtgagtaatgagagagaaagttgttgcaaaagttgtcactaaatggatgttcaaatatcatttctcaa 37257447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 3196089 - 3196158
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  3196089 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 3196158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 86
Target Start/End: Original strand, 9695065 - 9695146
Alignment:
Q  7 tcatgtgagtaatgtgagagaaagttgttcaaaaattgtcacat---ggttgtgcaaatatcatttctcaacaaagaattata 86  Q
    ||||||||||| || ||||||||||||| |||||||| || |||   |||||| ||||||||||||||||  ||| |||||||    
T  9695065 tcatgtgagta-tgagagagaaagttgtccaaaaattatctcataatggttgtacaaatatcatttctcattaaataattata 9695146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 15283256 - 15283321
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||| || |||||||||||||  |||||||||||||   ||||||| |||||||||||||||    
T  15283256 atgtgagta-tgagagagaaagttgtctaaaaattgtcacaaagtggttgtacaaatatcatttctc 15283321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 72
Target Start/End: Original strand, 20534068 - 20534122
Alignment:
Q  21 tgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||| |||||||| |||| |||||   |||||||||||||||||||||||    
T  20534068 tgagagaaaattgttcaacaattatcacaaaatggttgtgcaaatatcatttctc 20534122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 27307233 - 27307302
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  27307233 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctc 27307302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 29611925 - 29611993
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttc 70  Q
    |||||||||||||||||   ||||||| |||||| ||||||||||||||   ||||| |||||||||||||||    
T  29611925 agaacatcatgtgagta---tgagagagagttgt-caaaaattgtcacaaaatggttatgcaaatatcatttc 29611993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 36383535 - 36383488
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 49  Q
    ||||||||||||||||| || ||||||||||||| ||||| ||||||||    
T  36383535 agaacatcatgtgagta-tgagagagaaagttgtacaaaagttgtcaca 36383488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 125 - 217
Target Start/End: Complemental strand, 38623745 - 38623655
Alignment:
Q  125 gttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacccttttt 217  Q
    ||||| |||| |||||||| || ||||||| |||||| || ||  ||||||| || ||||||||||||||| |||||| |||||| |||||||    
T  38623745 gttaaagaagccaaaagaggaa-attttaagccaaaa-agaaagcatttaattcattgattacacaactttaaatgcaaatattatccttttt 38623655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44085347 - 44085300
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 49  Q
    ||||||||||||||||| ||||| ||||| |||| ||||||||||||||    
T  44085347 agaacatcatgtgagta-tgtgatagaaaattgtccaaaaattgtcaca 44085300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 226
Target Start/End: Original strand, 31636873 - 31636975
Alignment:
Q  123 tggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtc 222  Q
    |||||||| ||| |||||||| |  ||||||||||||||||  || ||||||||| | | ||||||||||||| |||||| |||||||| ||| |||||     
T  31636873 tggttaagaaaggcaaaagaggac-attttaaaccaaaagaaaaagtatttaatgtattaattacacaactttaaatgcaaatattaccttttgtaggtt 31636971  T
Q  223 atta 226  Q
    ||||    
T  31636972 atta 31636975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 170 - 231
Target Start/End: Complemental strand, 5583645 - 5583584
Alignment:
Q  170 atttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 231  Q
    |||||||||| ||||||||||||||||| |||| |||||||  ||||||||| |||| ||||    
T  5583645 atttaatgcattgattacacaactttgattgcaaatattacattttttaggttattatttaa 5583584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 3339503 - 3339570
Alignment:
Q  7 tcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 72  Q
    ||||||||||| || ||||||||||||| ||||| |||||||   |||||||| |||||||||||||||    
T  3339503 tcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctc 3339570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 25995507 - 25995440
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaa 74  Q
    ||||||||| || ||||||||||||| ||||||||| ||||   ||||||| |||||||||||||||||    
T  25995507 atgtgagta-tgagagagaaagttgtacaaaaattgccacaaaatggttgtacaaatatcatttctcaa 25995440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 12500025 - 12500099
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 73  Q
    |||||||||| | |||| ||||||| |||||| || |||||||||||||   || |||||||||||||||||||||    
T  12500025 agaacatcatataagta-tgtgagaaaaagttatttaaaaattgtcacaaaatgattgtgcaaatatcatttctca 12500099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 12507354 - 12507428
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 73  Q
    |||||||||| | |||| ||||||| |||||| || |||||||||||||   || |||||||||||||||||||||    
T  12507354 agaacatcatataagta-tgtgagaaaaagttatttaaaaattgtcacaaaatgattgtgcaaatatcatttctca 12507428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 12508876 - 12508802
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 73  Q
    |||||||||| | |||| ||||||| |||||| || |||||||||||||   || |||||||||||||||||||||    
T  12508876 agaacatcatataagta-tgtgagaaaaagttatttaaaaattgtcacaaaatgattgtgcaaatatcatttctca 12508802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 21210330 - 21210290
Alignment:
Q  3 aacatcatgtgagtaatgtgagagaaagttgttcaaaaattg 44  Q
    ||||||||||||||| || |||||||||||||||||||||||    
T  21210330 aacatcatgtgagta-tgagagagaaagttgttcaaaaattg 21210290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 2056852 - 2056783
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || |||||||||| || ||||| ||||||||   ||||||| |||||||||||||||    
T  2056852 catcatgtgagta-tgagagagaaagtagtacaaaagttgtcacaaattggttgtacaaatatcatttctc 2056783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 12501547 - 12501500
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 49  Q
    |||||||||| | |||| ||||||||||||||||| |||||||||||||    
T  12501547 agaacatcatataagta-tgtgagagaaagttgtttaaaaattgtcaca 12501500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 17417241 - 17417306
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 72  Q
    ||||||||| || ||||||||||||| |||||||||||||   ||| |||| |||||||||||||||    
T  17417241 atgtgagta-tgagagagaaagttgtccaaaaattgtcacataatgattgtacaaatatcatttctc 17417306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 124 - 211
Target Start/End: Complemental strand, 1422746 - 1422660
Alignment:
Q  124 ggttaaggaagtcaaaagagcaatattttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattacc 211  Q
    ||||||||||| |||||||| || ||||||| ||||||||| ||  ||| |||||| ||||||  |||||||||||||| ||||||||    
T  1422746 ggttaaggaagccaaaagag-aagattttaagccaaaagagtaagcattcaatgcattgattatccaactttgaatgcaaatattacc 1422660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 148 - 231
Target Start/End: Original strand, 19264704 - 19264787
Alignment:
Q  148 attttaaaccaaaagaggaaatatttaatgcaatgattacacaactttgaatgcatatattaccctttttaggtcattagttaa 231  Q
    |||||||  |||||||| |||||||||||||| ||||||  |||||||||||||| | |||||| |||||  ||||||| ||||    
T  19264704 attttaaggcaaaagagaaaatatttaatgcattgattatccaactttgaatgcaaacattaccatttttgagtcattatttaa 19264787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 74
Target Start/End: Original strand, 9599730 - 9599801
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaa 74  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||||    
T  9599730 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctcaa 9599801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 73
Target Start/End: Original strand, 30574379 - 30574449
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 73  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| ||||||||||||||||    
T  30574379 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctca 30574449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 9594547 - 9594478
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  9594547 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 9594478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 14914445 - 14914372
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    |||||||||||||| || ||| |||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  14914445 agaacatcatgtgaata-tgtaagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatatcatttctc 14914372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 7 - 74
Target Start/End: Original strand, 39788710 - 39788779
Alignment:
Q  7 tcatgtgagtaatgtgagagaaagttgttcaaaaattgtcacat---ggttgtgcaaatatcatttctcaa 74  Q
    ||||||||||| || ||||||||||||| ||||| |||||||||   |||||| |||||||||||||||||    
T  39788710 tcatgtgagta-tgagagagaaagttgtccaaaagttgtcacataatggttgtacaaatatcatttctcaa 39788779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 22920490 - 22920564
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctca 73  Q
    |||||||||||||||| ||| ||||||||||||| ||||| |||| ||   |||||||| ||||||| ||||||||    
T  22920490 agaacatcatgtgagt-atgagagagaaagttgtccaaaatttgttacaaaatggttgtacaaatattatttctca 22920564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 3634559 - 3634494
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||| || |||||||||||||  |||||||||||||   ||||||||||||||| |||||||    
T  3634559 atgtgagta-tgagagagaaagttgtaaaaaaattgtcacaaagtggttgtgcaaatataatttctc 3634494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28501690 - 28501643
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca 49  Q
    |||||||||||||| || || ||||||||||||| ||||||||||||||    
T  28501690 agaacatcatgtgaata-tgagagagaaagttgtacaaaaattgtcaca 28501643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 32379929 - 32379972
Alignment:
Q  3 aacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtca 47  Q
    ||||||||||||||| || ||||||||||||||||||| ||||||    
T  32379929 aacatcatgtgagta-tgagagagaaagttgttcaaaagttgtca 32379972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 32634777 - 32634708
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   || |||| |||||||||||||||    
T  32634777 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacagattgattgtacaaatatcatttctc 32634708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 113690 - 113624
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 73  Q
    ||||||||| ||||||||||||||||| |||| ||||||||   ||||||| ||||||||||||||||    
T  113690 atgtgagta-tgtgagagaaagttgttaaaaagttgtcacaaagtggttgtacaaatatcatttctca 113624  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 73
Target Start/End: Complemental strand, 33050252 - 33050182
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 73  Q
    ||||||||||||| || ||||||||||||| ||||| ||||||||   ||||||| ||||||||||||||||    
T  33050252 catcatgtgagta-tgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctca 33050182  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 13437263 - 13437198
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||| || |||| |||||||||||||| ||||||||   |||||||||||||||||||||||    
T  13437263 atgtgagta-tgagagaaaaagttgttcaaaagttgtcacaaaatggttgtgcaaatatcatttctc 13437198  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 6 - 73
Target Start/End: Original strand, 2347062 - 2347131
Alignment:
Q  6 atcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctca 73  Q
    |||||||||||| || ||||||||||||| | ||| ||||||||   ||||||| ||||||||||||||||    
T  2347062 atcatgtgagta-tgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctca 2347131  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 30864419 - 30864488
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    |||||| |||||| || ||||||||||||| ||||| ||||||||   ||||||| |||||||||||||||    
T  30864419 catcatatgagta-tgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctc 30864488  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 42118715 - 42118766
Alignment:
Q  24 gagaaagttgttcaaaaattgtcaca--tggttgtgcaaatatcatttctca 73  Q
    |||| |||||| ||||||||||||||  ||||||| ||||||||||||||||    
T  42118715 gagagagttgtccaaaaattgtcacaaatggttgtacaaatatcatttctca 42118766  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 43079638 - 43079703
Alignment:
Q  9 atgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||| || ||||||||||||| |||||||| |||||   ||||||| |||||||||||||||    
T  43079638 atgtgagta-tgagagagaaagttgtccaaaaattatcacaaagtggttgtacaaatatcatttctc 43079703  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 44511212 - 44511139
Alignment:
Q  1 agaacatcatgtgagtaatgtgagagaaagttgttcaaaaattgtcac---atggttgtgcaaatatcatttctc 72  Q
    ||||||||||||||||| ||  |||||||||||| ||||| |||||||   |||||||| | |||||||||||||    
T  44511212 agaacatcatgtgagta-tgaaagagaaagttgtacaaaagttgtcacaaaatggttgtacgaatatcatttctc 44511139  T

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Target: scaffold0011 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 18664 - 18587
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctcaacaaaga 80  Q
    ||||||||||||| || ||||||||||||| ||||| || |||||   ||||||| ||||||||||||||||| |||||    
T  18664 catcatgtgagta-tgagagagaaagttgtacaaaagttatcacaaattggttgtacaaatatcatttctcaataaaga 18587  T

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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 249144 - 249213
Alignment:
Q  5 catcatgtgagtaatgtgagagaaagttgttcaaaaattgtcaca---tggttgtgcaaatatcatttctc 72  Q
    ||||||||||||| || ||||||||||||| ||||| || |||||   || ||||||||||||||||||||    
T  249144 catcatgtgagta-tgagagagaaagttgtacaaaagttatcacaaattgattgtgcaaatatcatttctc 249213  T

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