View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18751_low_9 (Length: 363)

Name: NF18751_low_9
Description: NF18751
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18751_low_9
NF18751_low_9
[»] chr6 (5 HSPs)
chr6 (266-343)||(21355389-21355466)
chr6 (106-176)||(21146701-21146771)
chr6 (141-171)||(21211383-21211413)
chr6 (66-102)||(21146420-21146456)
chr6 (61-93)||(21258746-21258778)
[»] scaffold0016 (1 HSPs)
scaffold0016 (61-106)||(63096-63141)
[»] chr5 (1 HSPs)
chr5 (1-53)||(2322693-2322745)


Alignment Details
Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 266 - 343
Target Start/End: Original strand, 21355389 - 21355466
Alignment:
Q  266 ttatagataatcttcttggtgctgttttatatgtacatgaaccattcgatcactccattcttggtgctgagaatttgt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21355389 ttatagataatcttcttggtgctgttttatatgtacatgaaccattcgatcactccattcttggtgctgagaatttgt 21355466  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 21146701 - 21146771
Alignment:
Q  106 taatcattgatttgcatcagagctaatttaggaaattagccaagtgtagtcacatgtcaatgttttcaatg 176  Q
    |||||||| ||||| |||||||| || ||||||| |||||||| |||||||||||||||||||||||||||    
T  21146701 taatcattaatttgtatcagagccaagttaggaagttagccaattgtagtcacatgtcaatgttttcaatg 21146771  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 21211383 - 21211413
Alignment:
Q  141 ttagccaagtgtagtcacatgtcaatgtttt 171  Q
    |||||||||||||||||||||||||||||||    
T  21211383 ttagccaagtgtagtcacatgtcaatgtttt 21211413  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 21146420 - 21146456
Alignment:
Q  66 actaatatctatctagtgataattttataattcatta 102  Q
    ||||||||||||||||||||||||||| | |||||||    
T  21146420 actaatatctatctagtgataattttaaagttcatta 21146456  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 21258746 - 21258778
Alignment:
Q  61 tatgaactaatatctatctagtgataattttat 93  Q
    |||||||||||||||| ||||||||||||||||    
T  21258746 tatgaactaatatctaactagtgataattttat 21258778  T

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Target: scaffold0016 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 106
Target Start/End: Complemental strand, 63141 - 63096
Alignment:
Q  61 tatgaactaatatctatctagtgataattttataattcattacagt 106  Q
    ||||||| |||||| ||||||||||||||||| |||||||||||||    
T  63141 tatgaaccaatatccatctagtgataattttagaattcattacagt 63096  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 2322745 - 2322693
Alignment:
Q  1 agactaattgagagtacaaacttataagaaagtacaagtactttcactttata 53  Q
    ||||||||||||||| |||||| ||||||||||  || | |||||||||||||    
T  2322745 agactaattgagagtgcaaactaataagaaagtttaactcctttcactttata 2322693  T

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