View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18752_high_2 (Length: 653)
Name: NF18752_high_2
Description: NF18752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18752_high_2 |
 | |
|
| [»] scaffold0557 (4 HSPs) |
| | |
|
| [»] scaffold0442 (4 HSPs) |
| | |
|
| [»] scaffold0115 (8 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 587; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 4 - 642
Target Start/End: Original strand, 20921856 - 20922494
Alignment:
| Q |
4 |
actatgattccaaatcacagtgtcaatcaaagcatgcttcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatgggtc |
103 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20921856 |
actatgattccaaatcacggtatcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatggttc |
20921955 |
T |
|
| Q |
104 |
caactcctagtgtagacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagaaacaccatgatgaatacttcaatgatgagtaattc |
203 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
20921956 |
caactcctagtgtaaacttgcatcctcaggtctacacttcaagtgttcatcaacaacagaagagaaacaccatgatgaatacctcaatgatgagtaattc |
20922055 |
T |
|
| Q |
204 |
aatgccagttatgaacatggttgccactcccggatttaaccaaaacatgcagcatcaaatggatcaaaatttctatgcgcaacaagggggtgcaaatagc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20922056 |
aatgccagttatgaacatggttgccactcccggatttaaccaaaacatgcagcatcaaatggatcaaaatttctatgcgcaacaagggggtgcaaatagc |
20922155 |
T |
|
| Q |
304 |
tattatcactgcaaagtgcgtgatgctaaagtagctaatgttccaatgcaagcaaatgtctcaacaacaagctttgatccaacttttgagcatttgaagg |
403 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20922156 |
tattatcattgcaaagtgcgtgatgctgaagtagctaatgttccaatgcaagcaaatgtctcaacaacaagctttgatccaacttttgagcatttgaagg |
20922255 |
T |
|
| Q |
404 |
cattcaattctcaatttgatgttgatgcttacaacaactctgtggcatcatcaaattataattggaatcaataattaaggtaaaatcatgaattactttt |
503 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20922256 |
cattcaattcccaatttgatgttgatgcttacaacaactctgtggcatcatcaagttataattggaattaataattaaggtaaaatcatgaattactttt |
20922355 |
T |
|
| Q |
504 |
taaaaagtttcaccaatttttctcaaatagccccctcttctggttaaagagagtgaaactaataattggtaatttatgattttacttgtgcttattggtc |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20922356 |
taaaaagtttcaccaatttttctcaaatagccccctcttctggttaaagagagtgaaactaataattggtaatttatgattttacttgtgcttataggtc |
20922455 |
T |
|
| Q |
604 |
attggaaaaggaagctttgtgtttgttatgtgttctttt |
642 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20922456 |
attggaaaaggaagctttgtgtttgttatgtgttctttt |
20922494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 4 - 642
Target Start/End: Original strand, 20903250 - 20903893
Alignment:
| Q |
4 |
actatgattccaaatcacagtgtcaatcaaagcatgcttcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatgggtc |
103 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20903250 |
actatgattccaaatcagggtgttaatcaaagcatgcaacatcaaatctacaccggaagtgttcaacagaacaagaacaccatcatgagtactatggttc |
20903349 |
T |
|
| Q |
104 |
caactcctagtgt------agacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagaaacaccatgatgaatacttcaatgatgag |
197 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
20903350 |
caactcctggtgttaatcaaaacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatgatgaatactacaatgatgag |
20903449 |
T |
|
| Q |
198 |
taattcaatgccagttatgaacatggttgccactcccggatttaaccaaaacatgcagcatcaaatggatcaaaatttctatgcgcaacaagggggtgca |
297 |
Q |
| |
|
|| | ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
20903450 |
tactccaatgccagttatgaacatggttgcaactccaggatttaaccaaaacatgcagcatcaaatggatcaaaatttctatgcgcaacaagggggtcca |
20903549 |
T |
|
| Q |
298 |
aatagctattatcactgcaaagtgcgtgatgctaaagtagctaatgttccaatgcaagcaaatgtctcaacaacaagctttgatccaacttttgagcatt |
397 |
Q |
| |
|
|||||||| |||||||||||||||| | || || |||||||||||||||||||||||||||||| ||||| | || |||||||||| ||||||| |||| |
|
|
| T |
20903550 |
aatagctactatcactgcaaagtgcctaatactgaagtagctaatgttccaatgcaagcaaatgcctcaagagaaacctttgatccatcttttgatcatt |
20903649 |
T |
|
| Q |
398 |
tgaaggcattcaattctcaatttgatgttgatgcttacaacaactctgtggcatcatcaaattataattggaatcaataattaaggtaaaatcatgaatt |
497 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
20903650 |
tgaaggcattcaattgccaatctgatgttgatgcttacaacaactatgtggcatcatcaagttataattggaatcaataattaagataaaatcatgaatt |
20903749 |
T |
|
| Q |
498 |
actttttaaaaagtttcaccaatttttctcaaatagccccctcttctggttaaagagagtgaaactaataattggtaatttatgattttacttgtgctta |
597 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20903750 |
actttttaaaaagtttcaccaatttttc-caaatagccccctcttctggtttaagagagtgaaactaataattggtaatttatgattttacttgtgctta |
20903848 |
T |
|
| Q |
598 |
ttggtcattggaaaaggaagctttgtgtttgttatgtgttctttt |
642 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20903849 |
taggtcattggaaaaggaagctttgtgtttgttatgtgttctttt |
20903893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 354
Target Start/End: Original strand, 21005966 - 21006322
Alignment:
| Q |
4 |
actatgattccaaatcacagtgtcaatcaaagcatgcttcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatgggtc |
103 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
21005966 |
actatgattccaaatcacaatgtcaatcaaaacatgcagcgtcaaatctatcctgaaagtgttcaacaaaacaagaacaccatcatgagtactatggttc |
21006065 |
T |
|
| Q |
104 |
caactcctagtgtagact------tgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagaaacaccatgatgaatacttcaatgatgag |
197 |
Q |
| |
|
||||||||||||| | | |||| |||||||| ||||||||||||||||||||| |||||| ||| |||| |||||||||||||||| ||||||| |
|
|
| T |
21006066 |
caactcctagtgttaattctaacatgcaacctcaagtttacacttcaagtgttcatcaagaacagaggagcaacaacatgatgaatacttcattgatgag |
21006165 |
T |
|
| Q |
198 |
taattcaatgccagttatgaacatggttgccactcccggatttaaccaaaacatgcagcatcaaatggatcaaaatttctatgcgcaacaagggggtgca |
297 |
Q |
| |
|
|| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| |||| ||| |||| |||||||||| |||| |
|
|
| T |
21006166 |
tacttcaataccagttatgaacatggttgcgtctcccagatttaaccaaaacatgcagcctcaaatggaccaaagtttttatggccaacaaggggttgca |
21006265 |
T |
|
| Q |
298 |
aatagctattatcactgcaaagtgcgtgatgctaaagtagctaatgttccaatgcaa |
354 |
Q |
| |
|
|||||||| ||||||| |||||||| | ||||| ||||||||||||||||||||||| |
|
|
| T |
21006266 |
aatagctactatcactacaaagtgcataatgctgaagtagctaatgttccaatgcaa |
21006322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 4 - 642
Target Start/End: Original strand, 41336408 - 41337046
Alignment:
| Q |
4 |
actatgattccaaatcacagtgtcaatcaaagcatgcttcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatgggtc |
103 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
41336408 |
actatgattccaaatcacggtgtcaatcaaagcatgcatcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatggttc |
41336507 |
T |
|
| Q |
104 |
caactcctagtgt------agacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagaaacaccatgatgaatacttcaatgatgag |
197 |
Q |
| |
|
|||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
41336508 |
caactcctggtgttaatcaaaacttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagcaacaccatgatgaatacctcaatgatgag |
41336607 |
T |
|
| Q |
198 |
taattcaatgccagttatgaacatggttgccactcccggatttaaccaaaacatgcagcatcaaatggatcaaaatttctatgcgcaacaagggggtgca |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41336608 |
taattcaatgccagttatgaacatggttgcaactcccgtatttaaccaaaacatgcagcatcaaatggatcaaaatttctatgcgcaacaagggggtgca |
41336707 |
T |
|
| Q |
298 |
aatagctattatcactgcaaagtgcgtgatgctaaagtagctaatgttccaatgcaagcaaatgtctcaacaacaagctttgatccaacttttgagcatt |
397 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41336708 |
gatagctattataactacaaagtgcgtaatgctgaagtagctaatgttccaatgcaagcaaatgtctcaacaacaagctttgatccaacttttgagcatt |
41336807 |
T |
|
| Q |
398 |
tgaaggcattcaattctcaatttgatgttgatgcttacaacaactctgtggcatcatcaaattataattggaatcaataattaaggtaaaatcatgaatt |
497 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41336808 |
tgaaggcattcaattctcaatttcatgttgatgcttacaacaactctttggcatcatcaagttatgattggaatcaataattaaggtaaaatcatgaatt |
41336907 |
T |
|
| Q |
498 |
actttttaaaaagtttcaccaatttttctcaaatagccccctcttctggttaaagagagtgaaactaataattggtaatttatgattttacttgtgctta |
597 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
41336908 |
actttttaaaaagtttcaccactttttcacaaatagccccctcttctggttaaagagagtgaaactaataattggtaatttgtgattttacttg------ |
41337001 |
T |
|
| Q |
598 |
ttggtcattggaaaaggaagctttgtgtttgttatgtgttctttt |
642 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41337002 |
taggtcattggaaaaggaagctttgtatttgttatgtgttctttt |
41337046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557 (Bit Score: 117; Significance: 3e-59; HSPs: 4)
Name: scaffold0557
Description:
Target: scaffold0557; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 5963 - 5728
Alignment:
| Q |
4 |
actatgattccaaatcacagtgtcaatcaaagcatgcttcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatgggtc |
103 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
5963 |
actatgattccaaattacggtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaaaacaagaacaccatcatgagtactatggttc |
5864 |
T |
|
| Q |
104 |
caactcctagtgt------agacttgca---tc---ctcaagtctacacttcaagtgttcatcaacaacagaagagaaacaccatgatgaatacttcaat |
191 |
Q |
| |
|
||||||||||||| | || |||| || |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5863 |
caactcctagtgttaatcaaaacatgcacattcagtttcaagtctacacttcaagtgttaatcaacaacagaagagcaacaccatgatgaatacttcaac |
5764 |
T |
|
| Q |
192 |
gatgagtaattcaatgccagttatgaacatggttgc |
227 |
Q |
| |
|
|||||||| || ||||| |||||||||||||||||| |
|
|
| T |
5763 |
gatgagtactttaatgcaagttatgaacatggttgc |
5728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 258 - 445
Target Start/End: Original strand, 5328 - 5515
Alignment:
| Q |
258 |
tcaaatggatcaaaatttctatgcgcaacaagggggtgcaaatagctattatcactgcaaagtgcgtgatgctaaagtagctaatgttccaatgcaagca |
357 |
Q |
| |
|
|||||||||||||||||| | || |||||||| | |||||||||||| ||||||| |||||||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
5328 |
tcaaatggatcaaaatttatttggccaacaaggtgatgcaaatagctactatcactacaaagtgcctaatgctgaagtagctaatgttccaatgcaagca |
5427 |
T |
|
| Q |
358 |
aatgtctcaacaacaagctttgatccaacttttgagcatttgaaggcattcaattctcaatttgatgttgatgcttacaacaactctg |
445 |
Q |
| |
|
|||||||||||||||| ||||||| | ||||||| |||||||| |||||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
5428 |
aatgtctcaacaacaacctttgatttatcttttgatcatttgaatgcattcaattctcaatctgatgttgatgcttccaacaactctg |
5515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 5089 - 5329
Alignment:
| Q |
4 |
actatgattccaaatcacagtgtcaatcaaagcatgcttcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatgggtc |
103 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||||||| |||||||||||| || ||||||||||||| ||||||||||||||| |||||||||||| || |
|
|
| T |
5089 |
actatgattctaaatcacagtgttaattaaagcatgtagcgtcaaatctaccctagaagtgttcaacaaaacaagaacaccatcgtgagtactatggttc |
5188 |
T |
|
| Q |
104 |
caactcctagtgt------agacttgcatc------ctcaagtctacacttcaagtgttcatcaacaacagaagagaaacaccatgatgaatacttcaat |
191 |
Q |
| |
|
||||||| ||||| | || |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5189 |
caactccaagtgttaatgaaaacatgcacgtgctgtctcaagtctacacttcaagtgttaatcaacaacagaagagcaacaccatgatgaatacttcaat |
5288 |
T |
|
| Q |
192 |
gatgagtaattcaatgccagttatgaacatggttgccactc |
232 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||| |||| |
|
|
| T |
5289 |
gatgagtgctttaatgccagttacgaacatggttgcaactc |
5329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0557; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 260 - 446
Target Start/End: Complemental strand, 5722 - 5536
Alignment:
| Q |
260 |
aaatggatcaaaatttctatgcgcaacaagggggtgcaaatagctattatcactgcaaagtgcgtgatgctaaagtagctaatgttccaatgcaagcaaa |
359 |
Q |
| |
|
||||||| |||||||||| || |||||||| | || ||||||||| ||||||| |||||||| | ||| | |||||||||| ||||||||||||||||| |
|
|
| T |
5722 |
aaatggaccaaaatttctttggccaacaaggtgatggaaatagctactatcactacaaagtgcctaatggtgaagtagctaaggttccaatgcaagcaaa |
5623 |
T |
|
| Q |
360 |
tgtctcaacaacaagctttgatccaacttttgagcatttgaaggcattcaattctcaatttgatgttgatgcttacaacaactctgt |
446 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||| |||||||| | ||| |||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
5622 |
tgtctcaacaacaacctttgattcatcttttgatcatttgaatgtatttaattctcaatctgatgttaatgcttacaacaactctgt |
5536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442 (Bit Score: 107; Significance: 3e-53; HSPs: 4)
Name: scaffold0442
Description:
Target: scaffold0442; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 260 - 442
Target Start/End: Complemental strand, 9137 - 8955
Alignment:
| Q |
260 |
aaatggatcaaaatttctatgcgcaacaagggggtgcaaatagctattatcactgcaaagtgcgtgatgctaaagtagctaatgttccaatgcaagcaaa |
359 |
Q |
| |
|
||||||| |||||||||| || |||||||| | |||||||||||| ||||||| |||||||| | ||| | |||||||||||||||||||||||||||| |
|
|
| T |
9137 |
aaatggaccaaaatttctttggccaacaaggtgatgcaaatagctactatcactacaaagtgcctaatgttgaagtagctaatgttccaatgcaagcaaa |
9038 |
T |
|
| Q |
360 |
tgtctcaacaacaagctttgatccaacttttgagcatttgaaggcattcaattctcaatttgatgttgatgcttacaacaact |
442 |
Q |
| |
|
|||||||||||||| ||||||| || ||||||| |||||||| | |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9037 |
tgtctcaacaacaacctttgattcatcttttgatcatttgaatgtattcaattctcaatctgatgttgatgcttacaacaact |
8955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 4 - 196
Target Start/End: Complemental strand, 9357 - 9153
Alignment:
| Q |
4 |
actatgattccaaatcacagtgtcaatcaaagcatgcttcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatgggtc |
103 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||| | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||| || |
|
|
| T |
9357 |
actatgattccaaattacggtgttaatcaaagcatgcaacttcaaatctaccctggaagtgttcaacaaaacaagaacaccatcatgagtactatggttc |
9258 |
T |
|
| Q |
104 |
caactcctagtgt------agacttg--catcc----tcaagtctacacttcaagtgttcatcaacaacagaagagaaacaccatgatgaatacttcaat |
191 |
Q |
| |
|
||||||||||||| | || || ||| | |||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||| |
|
|
| T |
9257 |
caactcctagtgttaatcaaaacatgcacatgcagtttcaagtctacacttcaagtgttaatcaagaacagaagagcaacaccatgatgaatacttcaac |
9158 |
T |
|
| Q |
192 |
gatga |
196 |
Q |
| |
|
||||| |
|
|
| T |
9157 |
gatga |
9153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 258 - 445
Target Start/End: Original strand, 8693 - 8880
Alignment:
| Q |
258 |
tcaaatggatcaaaatttctatgcgcaacaagggggtgcaaatagctattatcactgcaaagtgcgtgatgctaaagtagctaatgttccaatgcaagca |
357 |
Q |
| |
|
||||||| |||||||||| | || |||||||| | | ||||||||| ||||||| |||||||| | ||| | |||||||||||||||||||||||| | |
|
|
| T |
8693 |
tcaaatgaatcaaaatttatttggccaacaaggtgaaggaaatagctactatcactacaaagtgcctaatgttgaagtagctaatgttccaatgcaagaa |
8792 |
T |
|
| Q |
358 |
aatgtctcaacaacaagctttgatccaacttttgagcatttgaaggcattcaattctcaatttgatgttgatgcttacaacaactctg |
445 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||| ||| |||| |||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
8793 |
aatgtctcaacaacaacttttgattcatcttttgatcatgtgaatgcattcaattctcactctgatgttgatgcttacaacaactctg |
8880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0442; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 8454 - 8694
Alignment:
| Q |
4 |
actatgattccaaatcacagtgtcaatcaaagcatgcttcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatgggtc |
103 |
Q |
| |
|
|||||||||| ||||||| |||| ||| ||||||||| ||||||||| || || ||||||||||||| |||||||||||||| |||||||||||| || |
|
|
| T |
8454 |
actatgattctaaatcacggtgttaattaaagcatgcaacgtcaaatcaaccctagaagtgttcaacaaaacaagaacaccattgtgagtactatggttc |
8553 |
T |
|
| Q |
104 |
caactcctagtgtaga------------cttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagaaacaccatgatgaatacttcaat |
191 |
Q |
| |
|
||||||||||||| | | |||| ||||||||||||| ||||||||| |||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
8554 |
aaactcctagtgtaaatcaaaacatgcacatgcagtctcaagtctacacctcaagtgttaatcaacaacaaaagagcaaaaccatgatgaatacttcaac |
8653 |
T |
|
| Q |
192 |
gatgagtaattcaatgccagttatgaacatggttgccactc |
232 |
Q |
| |
|
||||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
8654 |
gatgagtgtattaatgccagttatgaacatggttgcaactc |
8694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115 (Bit Score: 105; Significance: 4e-52; HSPs: 8)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 46945 - 47182
Alignment:
| Q |
7 |
atgattccaaatcacagtgtcaatcaaagcatgcttcgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatgggtccaa |
106 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| |||||||||||| |||||||||||||||| ||||||||| |||| |||||||||||| ||||| |
|
|
| T |
46945 |
atgattccaaatcacggtgttaatcaaagcatgcaacgtcaaatctaccctggaagtgttcaacaatacaagaacatcatcgtgagtactatggttccaa |
47044 |
T |
|
| Q |
107 |
ctcctagtgtaga------------cttgcatcctcaagtctacacttcaagtgttcatcaacaacagaagagaaacaccatgatgaatacttcaatgat |
194 |
Q |
| |
|
|||||||||| | | |||| |||||||||||||||||||| || ||||||||||||| || |||||||||||||||||||||| ||| |
|
|
| T |
47045 |
ctcctagtgttaatcaaaacatgcacatgcagtctcaagtctacacttcaagttttaatcaacaacagaacagtaacaccatgatgaatacttcaacgat |
47144 |
T |
|
| Q |
195 |
gagtaattcaatgccagttatgaacatggttgccactc |
232 |
Q |
| |
|
||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
47145 |
gagtactttaatgccagttatgaacatggttgcaactc |
47182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 258 - 445
Target Start/End: Original strand, 47181 - 47365
Alignment:
| Q |
258 |
tcaaatggatcaaaatttctatgcgcaacaagggggtgcaaatagctattatcactgcaaagtgcgtgatgctaaagtagctaatgttccaatgcaagca |
357 |
Q |
| |
|
||||||||| ||||||||| ||| |||||||| | | |||||||||| |||||| |||||||| | ||||| |||||||||||||||||||||||||| |
|
|
| T |
47181 |
tcaaatggaccaaaatttcaatggccaacaaggtgataaaaatagctataatcactacaaagtgcctaatgctgaagtagctaatgttccaatgcaagca |
47280 |
T |
|
| Q |
358 |
aatgtctcaacaacaagctttgatccaacttttgagcatttgaaggcattcaattctcaatttgatgttgatgcttacaacaactctg |
445 |
Q |
| |
|
|||||||||||||| ||||||| || || |||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
47281 |
aatgtctcaacaac---ctttgattcatctgttgatcatttgaatgcattcaattctcaatctgatgttgatgcttacaacaactctg |
47365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 128 - 227
Target Start/End: Complemental strand, 47939 - 47840
Alignment:
| Q |
128 |
ctcaagtctacacttcaagtgttcatcaacaacagaagagaaacaccatgatgaatacttcaatgatgagtaattcaatgccagttatgaacatggttgc |
227 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| || || |||||||||||||||||||||||| |
|
|
| T |
47939 |
ctcaagtctacgcttcaagtgttaatcaacaacagaagagcaacaccatgatgaatacttcaacgatgattactttaatgccagttatgaacatggttgc |
47840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 467 - 563
Target Start/End: Original strand, 47429 - 47522
Alignment:
| Q |
467 |
ggaatcaataattaaggtaaaatcatgaattactttttaaaaagtttcaccaatttttctcaaatagccccctcttctggttaaagagagtgaaact |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| | |||| |||||||||||||||||||| |
|
|
| T |
47429 |
ggaatcaataattaaggtaaaatcatgaattactttttaaaaagtttcaccactttttcacaaatag---catcttttggttaaagagagtgaaact |
47522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 368 - 444
Target Start/End: Complemental strand, 47744 - 47668
Alignment:
| Q |
368 |
caacaagctttgatccaacttttgagcatttgaaggcattcaattctcaatttgatgttgatgcttacaacaactct |
444 |
Q |
| |
|
|||||| ||||||| || ||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
47744 |
caacaacctttgattcatcttttgatcatttgattgcattcaattctcaatttgatgttgatgcttacaaaaactct |
47668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 467 - 530
Target Start/End: Complemental strand, 47603 - 47541
Alignment:
| Q |
467 |
ggaatcaataattaaggtaaaatcatgaattactttttaaaaagtttcaccaatttttctcaaa |
530 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
47603 |
ggaatcaataattaaggtaaaatcatgaattactttttaaaaag-ttcaccactttttcacaaa |
47541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 116
Target Start/End: Complemental strand, 48039 - 47966
Alignment:
| Q |
43 |
cgtcaaatctacactggaagtgttcaacagaacaagaacaccatcatgagtactatgggtccaactcctagtgt |
116 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||||||| |||||| ||||| ||||||||||||||| |
|
|
| T |
48039 |
cgtcaaatctagcttgtaagtgttcaacaaaacaagaacaccatcgtgagtattatggttccaactcctagtgt |
47966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0115; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 350
Target Start/End: Complemental strand, 47800 - 47745
Alignment:
| Q |
295 |
gcaaatagctattatcactgcaaagtgcgtgatgctaaagtagctaatgttccaat |
350 |
Q |
| |
|
|||||||| |||||||||| |||||||| | || |||||||||||||| ||||||| |
|
|
| T |
47800 |
gcaaatagttattatcactacaaagtgcctaattctaaagtagctaattttccaat |
47745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 5e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 161 - 303
Target Start/End: Original strand, 2589504 - 2589646
Alignment:
| Q |
161 |
agaagagaaacaccatgatgaatacttcaatgatgagtaattcaatgccagttatgaacatggttgccactcccggatttaaccaaaacatgcagcatca |
260 |
Q |
| |
|
||||||| | |||||||||||||||||| ||||| |||| ||| ||||||||| |||||| || | ||||| |||||||||||||||||||| | ||| |
|
|
| T |
2589504 |
agaagagcagcaccatgatgaatacttccatgataagtacttctttgccagttagcaacatgattcctactcctggatttaaccaaaacatgcaacctca |
2589603 |
T |
|
| Q |
261 |
aatggatcaaaatttctatgcgcaacaagggggtgcaaatagc |
303 |
Q |
| |
|
|||||| || |||||||||| |||||||||| |||||||||| |
|
|
| T |
2589604 |
aatggagcagaatttctatgatcaacaaggggatgcaaatagc |
2589646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 341 - 442
Target Start/End: Original strand, 2589660 - 2589764
Alignment:
| Q |
341 |
atgttccaatgcaagcaaatgtctcaacaa---caagctttgatccaacttttgagcatttgaaggcattcaattctcaatttgatgttgatgcttacaa |
437 |
Q |
| |
|
||||||||||||| | ||||||||||| || ||| ||| ||| || ||||||| | |||| ||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
2589660 |
atgttccaatgcatgaaaatgtctcaataatgacaaccttggatacatcttttgatgagttgatggcattcaattctcaatgtgatgttgaagcttacaa |
2589759 |
T |
|
| Q |
438 |
caact |
442 |
Q |
| |
|
||||| |
|
|
| T |
2589760 |
caact |
2589764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 553 - 596
Target Start/End: Original strand, 2589982 - 2590025
Alignment:
| Q |
553 |
agagtgaaactaataattggtaatttatgattttacttgtgctt |
596 |
Q |
| |
|
||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
2589982 |
agagtgaaacttaaaattggtaatttatgattttacttgtgctt |
2590025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University