View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18752_high_8 (Length: 406)
Name: NF18752_high_8
Description: NF18752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18752_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 5e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 192 - 388
Target Start/End: Complemental strand, 4604984 - 4604788
Alignment:
| Q |
192 |
ggcatcaataaggtttgggccggttctcgcttcgctgttcctataaaggccgcggctgtttttagttctaattatgatgacagttctgagctaagccgga |
291 |
Q |
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| T |
4604984 |
ggcatcaataagtgttgggccggttctcgcctttctgttccaataaaggccgcagctgttattagtacgacatatgatgacagttctgagctaagtcgga |
4604885 |
T |
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| Q |
292 |
gcagttttccggaaggttttgtttttggtactggctcctccaattaccaggtacgttttgtaacattgtgtgtgttgatgtgcatgaggtgtatgtt |
388 |
Q |
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| T |
4604884 |
gcagtttcccggaaggttttgtttttggtactggctcctccaattaccaggtacattttgtaacattgtgtgtgttggtgtgcatgaggtgtatgtt |
4604788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 264 - 364
Target Start/End: Complemental strand, 4627389 - 4627289
Alignment:
| Q |
264 |
tatgatgacagttctgagctaagccggagcagttttccggaaggttttgtttttggtactggctcctccaattaccaggtacgttttgtaacattgtgtg |
363 |
Q |
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| T |
4627389 |
tatgctgatagttttgagctaaatcggagcagttttccggaaggttttgtttttggtactggctcctccaattaccaggtacgttttgtaacattgtgtg |
4627290 |
T |
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| Q |
364 |
t |
364 |
Q |
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| T |
4627289 |
t |
4627289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 15 - 58
Target Start/End: Complemental strand, 4605161 - 4605118
Alignment:
| Q |
15 |
aatataaaagtagaagtatataaagataaacaaattgacatgcc |
58 |
Q |
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| T |
4605161 |
aatataaaagtagaagtatataaagataaaccaattgacatgcc |
4605118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 265 - 331
Target Start/End: Original strand, 18792973 - 18793039
Alignment:
| Q |
265 |
atgatgacagttctgagctaagccggagcagttttccggaaggttttgtttttggtactggctcctc |
331 |
Q |
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|||||||||||||||| ||||| ||||| ||||||||| ||||||| ||||| ||||||| |||||| |
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| T |
18792973 |
atgatgacagttctgatctaagtcggagtagttttccgaaaggtttcgttttcggtactgcctcctc |
18793039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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