View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18752_low_1 (Length: 978)
Name: NF18752_low_1
Description: NF18752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18752_low_1 |
 | |
|
| [»] scaffold0329 (2 HSPs) |
| | |
|
| [»] scaffold0088 (1 HSPs) |
| | |
|
| [»] scaffold1416 (1 HSPs) |
| | |
|
| [»] scaffold0314 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 902; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 902; E-Value: 0
Query Start/End: Original strand, 19 - 967
Target Start/End: Original strand, 11924040 - 11924989
Alignment:
| Q |
19 |
gttatcccttatactaccttatggcattttag-cttggacacttatctcatccaagaatgaataagatatctcttttgtatcactctattactaatgtga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
11924040 |
gttatcccttatactaccttatggcattttaggcttggacacttatctcatccaagaatgaataagatgtctcttttgtatcactctattactaatgtga |
11924139 |
T |
|
| Q |
118 |
agaaagttgtttgtcacgtttatcattttgctaagcataagcatttaccttttacttctagtctttcacatgcttctgtcaattttgagcttattcactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11924140 |
agaaagttgtttgtcacgtttatcattttgctaagcataagcatttaccttttacttctagtctttcacatgcttctgtcaattttgagcttattcactt |
11924239 |
T |
|
| Q |
218 |
tgatatttggggttccatttctatttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatatttctt |
317 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
11924240 |
tgatatttggggtcccatttctatttcctctctacatggtcataaatattttctcaccattttagatgatcacagtagatttctttggattatatttctt |
11924339 |
T |
|
| Q |
318 |
gaaactaaagctaaagtttcaactcgtgtcaataacttcgtaaccatgtttcatacccagtttcatacaactcccaaatatactagaactgataatggtc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11924340 |
gaaactaaagctaaagtttcaactcgtgtcaataacttcataaccatgtttcatacccagtttcacacaactcccaaatatactagaactgataatggtc |
11924439 |
T |
|
| Q |
418 |
ctgaattcatgcttagtgatctctatacttctcatggcattatacatcgaaaatcatgtgtagaaactccacaacaaagtggcagactggaaaggaaaca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11924440 |
ctgaattcatgcttagtgatctctatacttctcatggcattatacatcaaaaatcatgtgtagaaactccacaacaaagtggcagactggaaaggaaaca |
11924539 |
T |
|
| Q |
518 |
ccaacacatccataggtagagctttattcttttaatcaaaattacctccttctttttggtcttattctatacttcatgttgtgtttcttatcaatcttgt |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11924540 |
ccaacacatccataggtagagctttattcttttaatcaaaattacctccttctttttggtcttattctatacttcatgttgtgtttcttatcaatcttgt |
11924639 |
T |
|
| Q |
618 |
tcctactccactccttcaccatatgccagcttattatgttttacatcacaaattactagatattactacttttaaagtttttggttgcttgtgttatgct |
717 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11924640 |
tcctactccactccttcaccatatgccagcttattatgttttacatcacaaattactagatattactactttcaaagtttttggttgcttgtgttatgct |
11924739 |
T |
|
| Q |
718 |
tctacacttcaatgtcatatataactacatcctggagctagaaagtgttatgctcttttttacctacactctagagagatatttgtatccatgcatgtca |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
11924740 |
tctacacttcaatgtcatatataactacatcctggagctagaaagtgttatgctcttttttacctacattctagagagatatttgtatccatgcatgtta |
11924839 |
T |
|
| Q |
818 |
ctattcatgaaactattctcccgtatcacactaaatcatcctccacacctcatgattgggaatatttctcccattcttttattactacgactatcccttc |
917 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11924840 |
ctattcatgaaactattctcccgtatcacactaaatcatcctccacacctcatgattgggaatatttctcccattcttttattactacgactatcccttc |
11924939 |
T |
|
| Q |
918 |
tcccattacctctgacacacgtatctctgaccccataatggatgatgtcc |
967 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
11924940 |
tcccattacctctgacacacgtatctctgaccccatcatggatgatgtcc |
11924989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 390 - 523
Target Start/End: Complemental strand, 20324192 - 20324059
Alignment:
| Q |
390 |
cccaaatatactagaactgataatggtcctgaattcatgcttagtgatctctatacttctcatggcattatacatcgaaaatcatgtgtagaaactccac |
489 |
Q |
| |
|
||||||||| |||| | |||||||||||||| ||| | |||| |||| |||||| ||||||||||||||| |||| |||||| ||||| |||||||| | |
|
|
| T |
20324192 |
cccaaatatgttagatcagataatggtcctgagttcttacttaatgatttctatagttctcatggcattattcatcaaaaatcttgtgttgaaactcctc |
20324093 |
T |
|
| Q |
490 |
aacaaagtggcagactggaaaggaaacaccaaca |
523 |
Q |
| |
|
|||||| ||| ||| | || |||||||| ||||| |
|
|
| T |
20324092 |
aacaaaatggtagagttgagaggaaacatcaaca |
20324059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 425 - 465
Target Start/End: Original strand, 11925182 - 11925222
Alignment:
| Q |
425 |
catgcttagtgatctctatacttctcatggcattatacatc |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11925182 |
catgcttagtgatctctatacttctcatggcattatacatc |
11925222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 686 - 729
Target Start/End: Complemental strand, 16990691 - 16990648
Alignment:
| Q |
686 |
cttttaaagtttttggttgcttgtgttatgcttctacacttcaa |
729 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
16990691 |
ctttcaaagtttttggttgcctttgttatgcttctacacttcaa |
16990648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 287
Target Start/End: Complemental strand, 9847310 - 9847224
Alignment:
| Q |
201 |
tttgagcttattcactttgatatttggggttccatttctatttcctctctacatggtcataaatattttctcaccattttagatgat |
287 |
Q |
| |
|
||||||||| |||| |||||||||||||| || |||| ||||| ||| | |||||||| || |||||||| || ||| |||||||| |
|
|
| T |
9847310 |
tttgagcttcttcattttgatatttggggccccctttccatttcttctgttcatggtcacaagtattttcttactattgtagatgat |
9847224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 328
Target Start/End: Original strand, 42139434 - 42139551
Alignment:
| Q |
211 |
ttcactttgatatttggggttccatttctatttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatttctttggattat |
310 |
Q |
| |
|
|||| |||||||||||||| || || ||||| ||| | |||||||| |||||||||||||| || | |||||||||| ||||||| | ||||| || |
|
|
| T |
42139434 |
ttcattttgatatttggggaccccttgctattaattctattcatggtcacaaatattttctcactatagttgatgatcacactagatttttgtggatcat |
42139533 |
T |
|
| Q |
311 |
atttcttgaaactaaagc |
328 |
Q |
| |
|
||| ||| |||| ||||| |
|
|
| T |
42139534 |
attgcttaaaaccaaagc |
42139551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 4e-25; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 141 - 730
Target Start/End: Original strand, 52777573 - 52778167
Alignment:
| Q |
141 |
cattttgctaagcataagcatttaccttttacttctagtctttcacatgcttctgtcaattttgagcttattcactttgatatttggggttccatt-tct |
239 |
Q |
| |
|
||||||||||| ||||| ||||||||||| | ||| ||| |||| ||||||||| ||||||||| | |||| ||||||||||||| |||||| ||| |
|
|
| T |
52777573 |
cattttgctaaacataaacatttacctttcaattcaagtatttctcatgcttctaccaattttgaattacttcatcttgatatttgggg-tccattatct |
52777671 |
T |
|
| Q |
240 |
atttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatatttcttgaaactaaagctaaagtttcaa |
339 |
Q |
| |
|
||| | ||| |||||||||| | ||| ||||| || ||| |||||||||| | |||||||||||| | || || ||| || | ||||| ||||||| | |
|
|
| T |
52777672 |
attgcatctgtacatggtcacagatactttcttactattgtagatgatcatagcagatttctttgggtgattttacttaaatccaaagcagaagtttcta |
52777771 |
T |
|
| Q |
340 |
ctcgtgtcaataacttcgtaaccatgtttcatacccagtttcatacaactcccaaatatactagaactgataatggtcctgaattcatgcttagtgatct |
439 |
Q |
| |
|
| | ||||| || ||| | || ||| |||| || || ||||| | || || || | | ||||||||||||||| ||||| || |||||| | |
|
|
| T |
52777772 |
cacatgtcatcaatttcatcactatgattcaaacacaatttcacattacccctaagttcattagaactgataatggacctgagtttatgctttccacatt |
52777871 |
T |
|
| Q |
440 |
ctatacttctcatggcattatacatcgaaaatcatgtgtagaaactccacaacaaagtggcagactggaaaggaaacaccaacacatcc-----ataggt |
534 |
Q |
| |
|
||| |||| ||||| || || |||| |||||| ||||| |||||||| ||||||| ||| ||| | ||||||||||||||||| || | ||||| |
|
|
| T |
52777872 |
ttatgcttcacatggtataattcatcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggt |
52777971 |
T |
|
| Q |
535 |
agagctttattcttttaatcaaaattacctccttctttttggtcttattctatacttcatgttgtgtttcttatcaatcttgttcctactccactccttc |
634 |
Q |
| |
|
||||||||||| ||| |||| ||| | || |||||||||||||| ||| |||| ||||||| |||||| || ||||| ||||||||||| | |||| |
|
|
| T |
52777972 |
agagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgttcctaatcaacagagttcctactcctattcttc |
52778071 |
T |
|
| Q |
635 |
accatatgccagcttattatgttttacatcacaaattactagatattactacttttaaagtttttggttgcttgtgttatgcttctacacttcaat |
730 |
Q |
| |
|
| || | || |||||| ||| ||||||||| | |||| | | | | | |||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
52778072 |
ataatcagtcaccttattttgtcttacatcaccagttacctgctctcaatttgtttaaagtgtttggttgcttgtgttatgcttctactcttcaat |
52778167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 439 - 517
Target Start/End: Complemental strand, 32612555 - 32612477
Alignment:
| Q |
439 |
tctatacttctcatggcattatacatcgaaaatcatgtgtagaaactccacaacaaagtggcagactggaaaggaaaca |
517 |
Q |
| |
|
||||| |||||||||||||||| |||| ||| |||||||| |||||||| ||||||| ||||||| | || |||||||| |
|
|
| T |
32612555 |
tctatgcttctcatggcattattcatcaaaagtcatgtgttgaaactcctcaacaaaatggcagagttgagaggaaaca |
32612477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 252 - 526
Target Start/End: Original strand, 2359567 - 2359841
Alignment:
| Q |
252 |
catggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatatttcttgaaactaaagctaaagtttcaactcgtgtcaata |
351 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||| |||| |||||||| ||| | || ||||| |||| |||||| |||| || | | ||| || | |
|
|
| T |
2359567 |
catggtcatagatattttctcactattttagatgaccacaccagatttctctgggtcattcttcttaaaaccaaagctgaagtgtcttcacatgttaaga |
2359666 |
T |
|
| Q |
352 |
acttcgtaaccatgtttcatacccagtttcatacaactcccaaatatactagaactgataatggtcctgaattcatgcttagtgatctctatacttctca |
451 |
Q |
| |
|
| || | || ||| |||| | || ||||| || || || |||| | ||||||||||||||| |||||||||||| | | | | ||| |||| || |
|
|
| T |
2359667 |
attttattactatgattcagaatcattttcacaccacccctaaattcattagaactgataatggccctgaattcatgttaccttctttttatgcttcaca |
2359766 |
T |
|
| Q |
452 |
tggcattatacatcgaaaatcatgtgtagaaactccacaacaaagtggcagactggaaaggaaacaccaacacat |
526 |
Q |
| |
|
||||||||| || | ||||| |||||||||||||| ||||||| ||| ||| | ||||| ||||| |||||||| |
|
|
| T |
2359767 |
tggcattattcaccagaaatcttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacat |
2359841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 337
Target Start/End: Complemental strand, 30756292 - 30756168
Alignment:
| Q |
213 |
cactttgatatttggggttccatttctatttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatat |
312 |
Q |
| |
|
|||||||||||||||||| || | ||| | | ||| | |||||||| ||||| || || |||||| | |||||||| ||||| |||||||||||||| |
|
|
| T |
30756292 |
cactttgatatttggggtcccttatctgtaccttctgttcatggtcacaaatacttccttaccattgttgatgatcataataggtttctttggattattc |
30756193 |
T |
|
| Q |
313 |
ttcttgaaactaaagctaaagtttc |
337 |
Q |
| |
|
| |||||| | |||||| ||||||| |
|
|
| T |
30756192 |
tccttgaacccaaagctgaagtttc |
30756168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 337
Target Start/End: Complemental strand, 30763744 - 30763620
Alignment:
| Q |
213 |
cactttgatatttggggttccatttctatttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatat |
312 |
Q |
| |
|
|||||||||||||||||| || | ||| | | ||| | |||||||| ||||| || || |||||| | |||||||| ||||| |||||||||||||| |
|
|
| T |
30763744 |
cactttgatatttggggtcccttatctgtaccttctgttcatggtcacaaatacttccttaccattgttgatgatcataataggtttctttggattattc |
30763645 |
T |
|
| Q |
313 |
ttcttgaaactaaagctaaagtttc |
337 |
Q |
| |
|
| |||||| | |||||| ||||||| |
|
|
| T |
30763644 |
tccttgaacccaaagctgaagtttc |
30763620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 252 - 286
Target Start/End: Complemental strand, 927377 - 927343
Alignment:
| Q |
252 |
catggtcataaatattttctcaccattttagatga |
286 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
927377 |
catggacataaatattttctcaccattttagatga |
927343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 2e-21; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 140 - 611
Target Start/End: Complemental strand, 19587099 - 19586623
Alignment:
| Q |
140 |
tcattttgctaagcataagcatttaccttttacttctagtctttcacatgcttctgtcaattttgagcttattcactttgatatttggggttccatt-tc |
238 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| | ||| ||| |||| ||||||||| ||||||||| | |||| ||||||||||||| |||||| || |
|
|
| T |
19587099 |
tcattttgctaaacataaacatttacctttcaattcaagtatttctcatgcttctaccaattttgaattacttcatcttgatatttgggg-tccattatc |
19587001 |
T |
|
| Q |
239 |
tatttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatatttcttgaaactaaagctaaagtttca |
338 |
Q |
| |
|
|||| | ||| |||||||||| | ||| ||||| || ||| |||||||||| | |||||||||||| | || || ||| || | ||||| ||||||| |
|
|
| T |
19587000 |
tattgcatctgtacatggtcacagatactttcttactattgtagatgatcatagcagatttctttgggtgattttacttaaatccaaagcagaagtttct |
19586901 |
T |
|
| Q |
339 |
actcgtgtcaataacttcgtaaccatgtttcatacccagtttcatacaactcccaaatatactagaactgataatggtcctgaattcatgcttagtgatc |
438 |
Q |
| |
|
|| | ||||| || ||| | || ||| |||| || || || || | || || || | | ||||||||||||||| ||||| || || ||| |
|
|
| T |
19586900 |
acacatgtcatcaatttcatcactatgattcaaacacaattccacattacccctaagttcattagaactgataatggacctgagtttatactttccacct |
19586801 |
T |
|
| Q |
439 |
tctatacttctcatggcattatacatcgaaaatcatgtgtagaaactccacaacaaagtggcagactggaaaggaaacaccaacacatcc-----atagg |
533 |
Q |
| |
|
| ||| |||| ||||| || || |||| |||||| ||||| |||||||| ||||||| ||| ||| | |||||||||||||||||||| | |||| |
|
|
| T |
19586800 |
tttatgcttcacatggaataattcatcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacacattctcaatgtagg |
19586701 |
T |
|
| Q |
534 |
tagagctttattcttttaatcaaaattacctccttctttttggtcttattctatacttcatgttgtgtttcttatcaa |
611 |
Q |
| |
|
|||||||||||| ||| |||| ||| | || |||||||||||||| ||| |||| |||||||||||||| || ||||| |
|
|
| T |
19586700 |
tagagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgttgtgttcctaatcaa |
19586623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 141 - 611
Target Start/End: Original strand, 12285193 - 12285668
Alignment:
| Q |
141 |
cattttgctaagcataagcatttaccttttacttctagtctttcacatgcttctgtcaattttgagcttattcactttgatatttggggttccatt-tct |
239 |
Q |
| |
|
||||||||||| ||||| ||||||||||| | ||| ||| |||| ||||||||| ||||| ||| | |||| ||||||||||||| |||||| ||| |
|
|
| T |
12285193 |
cattttgctaaacataaacatttacctttcaattcaagtatttctcatgcttctaccaattatgaattacttcatcttgatatttgggg-tccattatct |
12285291 |
T |
|
| Q |
240 |
atttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatatttcttgaaactaaagctaaagtttcaa |
339 |
Q |
| |
|
||| | ||| |||||||||| | ||| ||||| || ||| |||||||||| | |||||||||||| | || || ||| || | ||||| ||||||| | |
|
|
| T |
12285292 |
attgcatctgtacatggtcacagatactttcttactattgtagatgatcatagcagatttctttgggtgattttacttaaatccaaagcagaagtttcta |
12285391 |
T |
|
| Q |
340 |
ctcgtgtcaataacttcgtaaccatgtttcatacccagtttcatacaactcccaaatatactagaactgataatggtcctgaattcatgcttagtgatct |
439 |
Q |
| |
|
| | ||||| || ||| | || ||| |||| || || ||||| | || || || | | ||||||||||||||| ||||| || |||||| | |
|
|
| T |
12285392 |
cacatgtcatcaatttcatcactatgattcaaacacaatttcacattacccctaagttcattagaactgataatggacctgagtttatgctttccacatt |
12285491 |
T |
|
| Q |
440 |
ctatacttctcatggcattatacatcgaaaatcatgtgtagaaactccacaacaaagtggcagactggaaaggaaacaccaacacatcc-----ataggt |
534 |
Q |
| |
|
||| |||| ||||| || || |||| |||||| ||||| ||||||| ||||||| ||| ||| | ||||||||||||||||| || | ||||| |
|
|
| T |
12285492 |
ttatgcttcacatggtataattcatcaaaaatcttgtgttaaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggt |
12285591 |
T |
|
| Q |
535 |
agagctttattcttttaatcaaaattacctccttctttttggtcttattctatacttcatgttgtgtttcttatcaa |
611 |
Q |
| |
|
||||||||||| ||| |||| ||| | || |||||||||||||| ||| |||| ||||||| |||||| || ||||| |
|
|
| T |
12285592 |
agagctttattatttcaatccaaactcccaccttctttttggtcatatgctattcttcatgctgtgttcctaatcaa |
12285668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 467 - 611
Target Start/End: Original strand, 7420071 - 7420220
Alignment:
| Q |
467 |
aaaatcatgtgtagaaactccacaacaaagtggcagactggaaaggaaacaccaacacatcc-----ataggtagagctttattcttttaatcaaaatta |
561 |
Q |
| |
|
|||||| ||||| |||||||| ||||||| ||| || | |||||||||||||||||||||| || |||||||||||| ||| |||| ||| | |
|
|
| T |
7420071 |
aaaatcttgtgttgaaactccccaacaaaatggtagggtagaaaggaaacaccaacacatcctcaatgtaaatagagctttattatttcaatccaaactc |
7420170 |
T |
|
| Q |
562 |
cctccttctttttggtcttattctatacttcatgttgtgtttcttatcaa |
611 |
Q |
| |
|
|| |||||||||||||| ||| |||| ||||||| | ||||||| ||||| |
|
|
| T |
7420171 |
ccaccttctttttggtcatatgctattcttcatgctatgtttctaatcaa |
7420220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 688 - 730
Target Start/End: Complemental strand, 19586546 - 19586504
Alignment:
| Q |
688 |
tttaaagtttttggttgcttgtgttatgcttctacacttcaat |
730 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
19586546 |
tttaaagtgtttggttgcttgtgttatgcttctactcttcaat |
19586504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 787 - 836
Target Start/End: Original strand, 12285880 - 12285929
Alignment:
| Q |
787 |
tctagagagatatttgtatccatgcatgtcactattcatgaaactattct |
836 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| ||||||||||| |||| |
|
|
| T |
12285880 |
tctagagagatatttgtctccagacatgtcacttttcatgaaacttttct |
12285929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: scaffold0329
Description:
Target: scaffold0329; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 141 - 611
Target Start/End: Original strand, 10902 - 11377
Alignment:
| Q |
141 |
cattttgctaagcataagcatttaccttttacttctagtctttcacatgcttctgtcaattttgagcttattcactttgatatttggggttccatt-tct |
239 |
Q |
| |
|
||||||||||| ||||| ||||||||||| | ||| ||| |||| ||||||||| ||||||||| | |||| ||||||||||||| |||||| ||| |
|
|
| T |
10902 |
cattttgctaaacataaacatttacctttcaattccagtatttctcatgcttctaccaattttgaattacttcatcttgatatttgggg-tccattatct |
11000 |
T |
|
| Q |
240 |
atttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatatttcttgaaactaaagctaaagtttcaa |
339 |
Q |
| |
|
||| | ||| |||||||||| | ||| ||||| || ||| |||||||||| | |||||||||||| | || || ||| || | ||||| ||||||| | |
|
|
| T |
11001 |
attgcatctgtacatggtcacagatactttcttactattgtagatgatcatagcagatttctttgggtgattttacttaaatccaaagcagaagtttcta |
11100 |
T |
|
| Q |
340 |
ctcgtgtcaataacttcgtaaccatgtttcatacccagtttcatacaactcccaaatatactagaactgataatggtcctgaattcatgcttagtgatct |
439 |
Q |
| |
|
| | ||||| || ||| | || ||| |||| || || ||||| | || || || | | ||||||||||||||| ||||| || |||||| | |
|
|
| T |
11101 |
cacatgtcatcaatttcatcactatgattcaaacacaatttcacattacccctaagttcattagaactgataatggacctgagtttatgctttccacatt |
11200 |
T |
|
| Q |
440 |
ctatacttctcatggcattatacatcgaaaatcatgtgtagaaactccacaacaaagtggcagactggaaaggaaacaccaacacatcc-----ataggt |
534 |
Q |
| |
|
||| |||| ||||| || || |||| |||||| ||||| |||||||| ||||||| ||| ||| | ||||||||||||||||| || | ||||| |
|
|
| T |
11201 |
ttatgcttcacatggtataattcatcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggt |
11300 |
T |
|
| Q |
535 |
agagctttattcttttaatcaaaattacctccttctttttggtcttattctatacttcatgttgtgtttcttatcaa |
611 |
Q |
| |
|
||||||||||| ||| |||| ||| | || ||||| |||||||| ||| |||| ||||||| |||||| || ||||| |
|
|
| T |
11301 |
agagctttattatttcaatccaaactcccaccttccttttggtcatatgctattcttcatgctgtgttcctaatcaa |
11377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0329; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 688 - 722
Target Start/End: Original strand, 11454 - 11488
Alignment:
| Q |
688 |
tttaaagtttttggttgcttgtgttatgcttctac |
722 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
11454 |
tttaaagtgtttggttgcttgtgttatgcttctac |
11488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 2e-18; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 141 - 611
Target Start/End: Complemental strand, 22177329 - 22176854
Alignment:
| Q |
141 |
cattttgctaagcataagcatttaccttttacttctagtctttcacatgcttctgtcaattttgagcttattcactttgatatttggggttccatt-tct |
239 |
Q |
| |
|
||||||||||| ||||| ||||||||||| | ||| ||| |||| ||||||||| ||||||||| | |||| ||||||||||||| |||||| ||| |
|
|
| T |
22177329 |
cattttgctaaacataaacatttacctttcaattccagtatttctcatgcttctaccaattttgaattacttcatcttgatatttgggg-tccattatct |
22177231 |
T |
|
| Q |
240 |
atttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatatttcttgaaactaaagctaaagtttcaa |
339 |
Q |
| |
|
||| | ||| |||||||||| | ||| ||||| || ||| |||||||||| | |||||||||||| | || || ||| || | ||||| ||||||| | |
|
|
| T |
22177230 |
attgcatctgtacatggtcacagatactttcttactattgtagatgatcatagcagatttctttgggtgattttacttaaatccaaagcagaagtttcta |
22177131 |
T |
|
| Q |
340 |
ctcgtgtcaataacttcgtaaccatgtttcatacccagtttcatacaactcccaaatatactagaactgataatggtcctgaattcatgcttagtgatct |
439 |
Q |
| |
|
| | ||||| || ||| | || ||| |||| || || ||||| | || || || | | ||||||||||||||| ||||| || |||||| | |
|
|
| T |
22177130 |
cacatgtcatcaatttcatcactatgattcaaacacaatttcacattacccctaagttcattagaactgataatggacctgagtttatgctttccacatt |
22177031 |
T |
|
| Q |
440 |
ctatacttctcatggcattatacatcgaaaatcatgtgtagaaactccacaacaaagtggcagactggaaaggaaacaccaacacatcc-----ataggt |
534 |
Q |
| |
|
||| |||| ||||| || || |||| |||||| ||||| |||||||| ||||||| ||| ||| | ||||||||||||||||| || | ||||| |
|
|
| T |
22177030 |
ttatgcttcacatggtataattcatcaaaaatcttgtgttgaaactccccaacaaaatggtagagtagaaaggaaacaccaacatattctcaatgtaggt |
22176931 |
T |
|
| Q |
535 |
agagctttattcttttaatcaaaattacctccttctttttggtcttattctatacttcatgttgtgtttcttatcaa |
611 |
Q |
| |
|
||||||||||| ||| |||| ||| | || ||||| |||||||| ||| |||| ||||||| |||||| || ||||| |
|
|
| T |
22176930 |
agagctttattatttcaatccaaactcccaccttccttttggtcatatgctattcttcatgctgtgttcctaatcaa |
22176854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 252 - 526
Target Start/End: Original strand, 10866892 - 10867166
Alignment:
| Q |
252 |
catggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatatttcttgaaactaaagctaaagtttcaactcgtgtcaata |
351 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||| | || ||||| |||| |||||| |||| || | | ||| || | |
|
|
| T |
10866892 |
catggtcatagatattttctcaccattttagatgatcacagcagatttctctgggtcattcttcttaaaaccaaagctgaagtgtcttcacatgttaaga |
10866991 |
T |
|
| Q |
352 |
acttcgtaaccatgtttcatacccagtttcatacaactcccaaatatactagaactgataatggtcctgaattcatgcttagtgatctctatacttctca |
451 |
Q |
| |
|
| || | || ||| |||| | || ||||| || || || |||| | ||||||||||||||| |||||||||||| | | | | ||| |||| || |
|
|
| T |
10866992 |
attttattactatgattcagaatcattttcacaccacccctaaattcattagaactgataatggccctgaattcatgttaccttctttttatgcttcaca |
10867091 |
T |
|
| Q |
452 |
tggcattatacatcgaaaatcatgtgtagaaactccacaacaaagtggcagactggaaaggaaacaccaacacat |
526 |
Q |
| |
|
||||||||| || | ||||| |||||||||||||| ||||||| ||| ||| | ||||| ||||| |||||||| |
|
|
| T |
10867092 |
tggcattattcaccagaaatcttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacat |
10867166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 22643245 - 22643343
Alignment:
| Q |
140 |
tcattttgctaagcataagcatttaccttttacttctagtctttcacatgcttctgtcaattttgagcttattcactttgatatttggggttccatttc |
238 |
Q |
| |
|
||||| |||||| ||||| |||||||||||| | |||||| |||| |||||||| ||||||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
22643245 |
tcattatgctaaacataaacatttacctttttcatctagtatttctcatgcttcaagtaattttgagttaattcactttgatatttggggtcccatttc |
22643343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 199 - 428
Target Start/End: Complemental strand, 23167777 - 23167548
Alignment:
| Q |
199 |
attttgagcttattcactttgatatttggggttccatttctatttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatt |
298 |
Q |
| |
|
|||||||||||||||| | |||||||||||| | || |||| | | ||| | ||||| || | ||||||| | || |||||||||||||| | |||||| |
|
|
| T |
23167777 |
attttgagcttattcatctagatatttggggtcctatatctactgcttctgttcatggccacatatattttttaactattttagatgatcatagtagatt |
23167678 |
T |
|
| Q |
299 |
tctttggattatatttcttgaaactaaagctaaagtttcaactcgtgtcaataacttcgtaaccatgtttcatacccagtttcatacaactcccaaatat |
398 |
Q |
| |
|
||||||||||| | ||| |||| |||||| ||||||| || | ||| || ||||| | || ||| || | | ||| ||||| || |||||||| | | |
|
|
| T |
23167677 |
cctttggattattctccttaaaaccaaagctgaagtttccacacatgttaaaaactttatcactatgattaagaaccattttcacaccactcccaagttt |
23167578 |
T |
|
| Q |
399 |
actagaactgataatggtcctgaattcatg |
428 |
Q |
| |
|
| |||||||||||||| |||||||||||| |
|
|
| T |
23167577 |
ataagaactgataatggccctgaattcatg |
23167548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 252 - 526
Target Start/End: Original strand, 5239350 - 5239624
Alignment:
| Q |
252 |
catggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatatttcttgaaactaaagctaaagtttcaactcgtgtcaata |
351 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| |||||||| ||| | || ||||| |||| |||||| |||| || | | ||| || | |
|
|
| T |
5239350 |
catggtcatagatattttctcaccattttagatgaccacaccagatttctctgggtcattcttcttaaaaccaaagctgaagtgtcttcacatgttaaga |
5239449 |
T |
|
| Q |
352 |
acttcgtaaccatgtttcatacccagtttcatacaactcccaaatatactagaactgataatggtcctgaattcatgcttagtgatctctatacttctca |
451 |
Q |
| |
|
| || | || ||| |||| | || ||||| || || || |||| | ||||||||||||||| |||||||||||| | | | | ||| |||| || |
|
|
| T |
5239450 |
attttattactatgattcagaatcattttcacaccacccctaaattcattagaactgataatggccctgaattcatgttaccttctttttatgcttcaca |
5239549 |
T |
|
| Q |
452 |
tggcattatacatcgaaaatcatgtgtagaaactccacaacaaagtggcagactggaaaggaaacaccaacacat |
526 |
Q |
| |
|
||||||||| || | ||||| |||||||||||||| ||||||| ||| ||| | ||||| ||||| |||||||| |
|
|
| T |
5239550 |
tggcattattcaccagaaatcttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacat |
5239624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 252 - 334
Target Start/End: Original strand, 10652747 - 10652829
Alignment:
| Q |
252 |
catggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatatttcttgaaactaaagctaaagt |
334 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||| | || ||||| |||| |||||| |||| |
|
|
| T |
10652747 |
catggtcatagatattttctcaccattttagatgatcacagcagatttctctgggtcattcttcttaaaaccaaagctgaagt |
10652829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 402 - 526
Target Start/End: Original strand, 10652897 - 10653021
Alignment:
| Q |
402 |
agaactgataatggtcctgaattcatgcttagtgatctctatacttctcatggcattatacatcgaaaatcatgtgtagaaactccacaacaaagtggca |
501 |
Q |
| |
|
|||||||||||||| |||||||||||| | | | | ||| |||| ||||||||||| || | ||||| |||||||||||||| ||||||| ||| | |
|
|
| T |
10652897 |
agaactgataatggccctgaattcatgttaccttctttttatgcttcacatggcattattcaccagaaatcttgtgtagaaactccccaacaaaatggta |
10652996 |
T |
|
| Q |
502 |
gactggaaaggaaacaccaacacat |
526 |
Q |
| |
|
|| | ||||| ||||| |||||||| |
|
|
| T |
10652997 |
gagttgaaagaaaacatcaacacat |
10653021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 688 - 722
Target Start/End: Complemental strand, 22176777 - 22176743
Alignment:
| Q |
688 |
tttaaagtttttggttgcttgtgttatgcttctac |
722 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| |
|
|
| T |
22176777 |
tttaaagtgtttggttgcttgtgttatgcttctac |
22176743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 534 - 608
Target Start/End: Original strand, 22643644 - 22643718
Alignment:
| Q |
534 |
tagagctttattcttttaatcaaaattacctccttctttttggtcttattctatacttcatgttgtgtttcttat |
608 |
Q |
| |
|
|||||| || || ||| ||||||||||||||||| | |||||||||||| || | || |||| |||||||||||| |
|
|
| T |
22643644 |
tagagccttgttatttcaatcaaaattacctcctacattttggtcttatgctgtcctccatgctgtgtttcttat |
22643718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 387 - 612
Target Start/End: Original strand, 35087343 - 35087573
Alignment:
| Q |
387 |
actcccaaatatactagaactgataatggtcctgaattcatgcttagtgatctctatacttctcatggcattatacatcgaaaatcatgtgtagaaactc |
486 |
Q |
| |
|
||||||||||| | ||||||||||||||| || |||||| | ||| |||| | ||| | |||||||| ||| | |||| ||||| ||||| ||||||| |
|
|
| T |
35087343 |
actcccaaatacattagaactgataatggaccagaattcttacttcatgatttttatgcatctcatggtattgttcatcagaaatcttgtgttgaaactc |
35087442 |
T |
|
| Q |
487 |
cacaacaaagtggcagactggaaaggaaacaccaacacatccata-----ggtagagctttattcttttaatcaaaattacctccttctttttggtctta |
581 |
Q |
| |
|
| || |||| ||| ||| | || || ||||| ||||| || | | || ||||||||||| ||| |||| ||||| || |||||||||||||| || |
|
|
| T |
35087443 |
cccagcaaaatgggagagtagagagaaaacatcaacatattctcaatgttggcagagctttattatttcaatccaaattgccgccttctttttggtcata |
35087542 |
T |
|
| Q |
582 |
ttctatacttcatgttgtgtttcttatcaat |
612 |
Q |
| |
|
| | || | |||||||||||||| |||||| |
|
|
| T |
35087543 |
tgccattttacatgttgtgtttctcatcaat |
35087573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0088 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0088
Description:
Target: scaffold0088; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 186 - 430
Target Start/End: Original strand, 52316 - 52560
Alignment:
| Q |
186 |
catgcttctgtcaattttgagcttattcactttgatatttggggttccatttctatttcctctctacatggtcataaatattttctcaccattttagatg |
285 |
Q |
| |
|
||||||||| ||||||||| || |||||||| || ||||||||| || | |||||| | ||| ||||||| || | ||||||||| ||||| ||||||| |
|
|
| T |
52316 |
catgcttctaacaattttgaactaattcacttagagatttggggtcccctctctattgcttctgtacatggccaaatatattttcttaccatattagatg |
52415 |
T |
|
| Q |
286 |
atcacaatagatttctttggattatatttcttgaaactaaagctaaagtttcaactcgtgtcaataacttcgtaaccatgtttcatacccagtttcatac |
385 |
Q |
| |
|
| || | || ||||||||| |||| || ||| || | |||||||||||||| || | ||| || || ||| | |||||| | || | || |||||||| |
|
|
| T |
52416 |
accatagcaggtttctttgggttatcttacttaaatcaaaagctaaagtttcgacacatgtaaaaaatttcatcaccatgatacaaatacattttcatac |
52515 |
T |
|
| Q |
386 |
aactcccaaatatactagaactgataatggtcctgaattcatgct |
430 |
Q |
| |
|
|| |||||||| | ||||| |||||||| ||||||||| |||| |
|
|
| T |
52516 |
tacacccaaatacatcagaacagataatggccctgaattcttgct |
52560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 252 - 526
Target Start/End: Original strand, 14814808 - 14815082
Alignment:
| Q |
252 |
catggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatatttcttgaaactaaagctaaagtttcaactcgtgtcaata |
351 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| |||| |||||||| ||| | || ||||| |||| |||||| |||| || | | ||| || | |
|
|
| T |
14814808 |
catggtcatagatattttctcaccattttagatgaccacaccagatttctctgggtcattcttcttaaaaccaaagctgaagtgtcttcacatgttaaga |
14814907 |
T |
|
| Q |
352 |
acttcgtaaccatgtttcatacccagtttcatacaactcccaaatatactagaactgataatggtcctgaattcatgcttagtgatctctatacttctca |
451 |
Q |
| |
|
| || | || ||| |||| | || ||||| || || || |||| | ||||||||||||||| |||||||||||| | | | | ||| |||| || |
|
|
| T |
14814908 |
attttattactatgattcagaatcattttcacaccacccctaaattcattagaactgataatggccctgaattcatgttaccttctttttatgcttcaca |
14815007 |
T |
|
| Q |
452 |
tggcattatacatcgaaaatcatgtgtagaaactccacaacaaagtggcagactggaaaggaaacaccaacacat |
526 |
Q |
| |
|
||||||||| || | ||||| |||||||||||||| ||||||| ||| ||| | ||||| ||||| |||||||| |
|
|
| T |
14815008 |
tggcattattcaccagaaatcttgtgtagaaactccccaacaaaatggtagagttgaaagaaaacatcaacacat |
14815082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 26969517 - 26969626
Alignment:
| Q |
197 |
caattttgagcttattcactttgatatttggggttccatttctatttcctctctacatggtcataaatattttctcaccattttagatgatcacaataga |
296 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||| ||||||| |||| ||| | |||||| ||| ||||||||||| || || |||||||| |||||| |
|
|
| T |
26969517 |
caattttgagttacttcactttgatatatggggtcccatttcagtttcttctattcatggtaatagatattttctcattatattggatgatcataataga |
26969616 |
T |
|
| Q |
297 |
tttctttgga |
306 |
Q |
| |
|
||||| |||| |
|
|
| T |
26969617 |
tttctctgga |
26969626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 686 - 738
Target Start/End: Original strand, 6342629 - 6342681
Alignment:
| Q |
686 |
cttttaaagtttttggttgcttgtgttatgcttctacacttcaatgtcatata |
738 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
6342629 |
cttttaaagtttttggttgcctttgttatgcttctacacttcaagctcatata |
6342681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 408 - 517
Target Start/End: Complemental strand, 5919862 - 5919753
Alignment:
| Q |
408 |
gataatggtcctgaattcatgcttagtgatctctatacttctcatggcattatacatcgaaaatcatgtgtagaaactccacaacaaagtggcagactgg |
507 |
Q |
| |
|
|||||||||||||| | |||||| | || | ||||||||| |||| ||||| ||| |||||||||||| |||||||| ||||||| ||| ||| | | |
|
|
| T |
5919862 |
gataatggtcctgagtatttgcttaattatttgtatacttcttatggtattattcataaaaaatcatgtgttgaaactcctcaacaaaatggtagagttg |
5919763 |
T |
|
| Q |
508 |
aaaggaaaca |
517 |
Q |
| |
|
| |||||||| |
|
|
| T |
5919762 |
agaggaaaca |
5919753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 141 - 431
Target Start/End: Original strand, 29499339 - 29499626
Alignment:
| Q |
141 |
cattttgctaagcataagcatttaccttttacttctagtctttcacatgcttctgtcaattttgagcttattcactttgatatttggggttccatt-tct |
239 |
Q |
| |
|
|||||| |||| ||||| |||||| |||||||||||||| || ||||||||| ||||||||| |||||||| |||| |||||||| |||||| | |
|
|
| T |
29499339 |
catttttctaaacataaacatttatcttttacttctagtaattatcatgcttctaccaattttgaacttattcatcttgacatttgggg-tccattattc |
29499437 |
T |
|
| Q |
240 |
atttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatttctttggattatatttcttgaaactaaagctaaagtttcaa |
339 |
Q |
| |
|
||| | | | ||||||| || |||||||| || || | || |||| || || |||||||||||| | || || ||| ||||||| ||| ||| || | |
|
|
| T |
29499438 |
attgcttttgtacatggacacaaatatttccttac---tatatatgaccataacagatttctttgggtgattttacttaaaactaaggctggagtgtcta |
29499534 |
T |
|
| Q |
340 |
ctcgtgtcaataacttcgtaaccatgtttcatacccagtttcatacaactcccaaatatactagaactgataatggtcctgaattcatgctt |
431 |
Q |
| |
|
| | |||||| |||||| |||||||| |||| || || |||||||| || || |||| | |||||||| ||||||| ||||||||||||| |
|
|
| T |
29499535 |
cacatgtcaaaaacttcataaccatgattcaaacacactttcatactacccctaaattcattagaactgtcaatggtcttgaattcatgctt |
29499626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 686 - 738
Target Start/End: Original strand, 28017658 - 28017710
Alignment:
| Q |
686 |
cttttaaagtttttggttgcttgtgttatgcttctacacttcaatgtcatata |
738 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
28017658 |
cttttaaagtttttggttgcctttgttatgcttctacacttcaagctcatata |
28017710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 686 - 729
Target Start/End: Complemental strand, 20483526 - 20483483
Alignment:
| Q |
686 |
cttttaaagtttttggttgcttgtgttatgcttctacacttcaa |
729 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
20483526 |
cttttaaagtttttggttgcctttgttatgcttctacacttcaa |
20483483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 787 - 884
Target Start/End: Original strand, 29499943 - 29500040
Alignment:
| Q |
787 |
tctagagagatatttgtatccatgcatgtcactattcatgaaactattctcccgtatcacactaaatcatcctccacacctcatgattgggaatattt |
884 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||| | |||| || ||||| || || || |||||||| | ||||||||||||||| |
|
|
| T |
29499943 |
tctagagagatatttgtatccagacatgtcacttttcatgaaaattttcttccctatcatcttacttcttcatccacaccacctgattgggaatattt |
29500040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1416 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1416
Description:
Target: scaffold1416; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 686 - 738
Target Start/End: Complemental strand, 1102 - 1050
Alignment:
| Q |
686 |
cttttaaagtttttggttgcttgtgttatgcttctacacttcaatgtcatata |
738 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||| ||||||| |
|
|
| T |
1102 |
cttttaaagtttttggttgcctttgttatgcttctacacttcaagctcatata |
1050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0314 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0314
Description:
Target: scaffold0314; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 298
Target Start/End: Original strand, 19037 - 19094
Alignment:
| Q |
241 |
tttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatt |
298 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| || | ||||||||||||||||| |
|
|
| T |
19037 |
tttcctctatacatggtcatcaatattttctcactatagtggatgatcacaatagatt |
19094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 217 - 298
Target Start/End: Original strand, 44229460 - 44229541
Alignment:
| Q |
217 |
ttgatatttggggttccatttctatttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatt |
298 |
Q |
| |
|
|||| ||||||||| | ||||||| || ||| | |||||||| |||||||||||||||||| | |||||||||| |||||| |
|
|
| T |
44229460 |
ttgacatttggggtcctctttctatatcttctattcatggtcacaaatattttctcaccattgttgatgatcacagtagatt |
44229541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 328
Target Start/End: Complemental strand, 21029941 - 21029824
Alignment:
| Q |
211 |
ttcactttgatatttggggttccatttctatttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatttctttggattat |
310 |
Q |
| |
|
|||| |||||||||||||| || || ||||| ||| | |||||||| |||||||||||||| || | |||||||||| ||||||| | ||||| || |
|
|
| T |
21029941 |
ttcattttgatatttggggaccccttgctattaattctattcatggtcacaaatattttctcactatagttgatgatcacactagatttttgtggatcat |
21029842 |
T |
|
| Q |
311 |
atttcttgaaactaaagc |
328 |
Q |
| |
|
||| ||| |||| ||||| |
|
|
| T |
21029841 |
attgcttaaaaccaaagc |
21029824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 328
Target Start/End: Complemental strand, 18481968 - 18481851
Alignment:
| Q |
211 |
ttcactttgatatttggggttccatttctatttcctctctacatggtcataaatattttctcaccattttagatgatcacaatagatttctttggattat |
310 |
Q |
| |
|
|||| |||||||||||||| || || ||||| ||| | |||||||| ||||||||||||||||| | |||||||||| ||||||| | || || || |
|
|
| T |
18481968 |
ttcattttgatatttggggaccccttgctattaattctattcatggtcacaaatattttctcaccatagttgatgatcacactagatttttgtgaatcat |
18481869 |
T |
|
| Q |
311 |
atttcttgaaactaaagc |
328 |
Q |
| |
|
||| ||| |||| ||||| |
|
|
| T |
18481868 |
attgcttaaaaccaaagc |
18481851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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