View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18752_low_10 (Length: 374)
Name: NF18752_low_10
Description: NF18752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18752_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 45039101 - 45039446
Alignment:
| Q |
13 |
catcatgattctttgcctttgtcatcatcaacagctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcag |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45039101 |
catcatgattctttgcctttgtcatcatcaacagctaaccaagggtcgaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcag |
45039200 |
T |
|
| Q |
113 |
agaggaataggagacaactacttacaagtaagatcatagaactttcggccttgatacctggattgaagaaggttagtatgtaatatattatattaaacct |
212 |
Q |
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| T |
45039201 |
agagaaataggagacaactacttacaagtaagatcatagaactttcggccttgatacctggattgaagaaggttagtatgtaatatattatattaaacct |
45039300 |
T |
|
| Q |
213 |
agatgaatgagtaaatttttatatagtagttatcattggatagaagctacaaactaaaaactatctaatgtctgtgtagattgataaggttcatgtggta |
312 |
Q |
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| T |
45039301 |
agatgaatgagtaaatttttatatagtagttatcattggatagaagctacaaactaaaaactatctaatgtctgtgtagattgataaggttcatgtggta |
45039400 |
T |
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| Q |
313 |
acggaagctatcaattacatgaaacagcttgaagaacgtttgaaag |
358 |
Q |
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| T |
45039401 |
acggaagctatcaattacatgaaacaacttgaagaacgtttgaaag |
45039446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 13 - 330
Target Start/End: Original strand, 45064737 - 45065054
Alignment:
| Q |
13 |
catcatgattctttgcctttgtcatcatcaacag--ctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtc |
110 |
Q |
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| T |
45064737 |
catcaagattatttgcctttgtcatcatcagcgcgactaaacaagggtcaaattcgaagaagcctcgaagcgcttatgagacagtaggtcacataatgtc |
45064836 |
T |
|
| Q |
111 |
agagaggaataggagacaactacttacaagtaagatcatagaactttcggccttgatacctggattgaagaaggttagtatgtaatatattatattaaac |
210 |
Q |
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| T |
45064837 |
agagaggaatatgagacaacttcttacaagtaagatcatataactttcgagctttataccaggattgaagaaggttagtctataacatattatattaaac |
45064936 |
T |
|
| Q |
211 |
ctagatgaatgagtaaatttttatatagtagttatcattggatagaagctacaaactaaaaactatctaatgtctgtgtagattgataaggttcatgtgg |
310 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||| |||| | | |||||| ||||||| | || |||||||||||| ||||||||||| |
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| T |
45064937 |
ctagatgaatgagtaa--ttttttatagtagttatcattggatagatgctatacaataaaaattatctaaaggctatgtagattgatacggttcatgtgg |
45065034 |
T |
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| Q |
311 |
taacggaagctatcaattac |
330 |
Q |
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| T |
45065035 |
taacggaagctatcaattac |
45065054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 16 - 196
Target Start/End: Complemental strand, 45083508 - 45083328
Alignment:
| Q |
16 |
catgattctttgcctttgtcatcatcaacagctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcagaga |
115 |
Q |
| |
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|||||||||||||||||||||||||||| ||| | || ||||| ||||| | |||| |||||| | |||| || || |||||||||||||| |||||| |
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| T |
45083508 |
catgattctttgcctttgtcatcatcaaaggctgaccacgggtcgaattcaaggaagactcgaagcgcttctgagacgctagatcacataataacagaga |
45083409 |
T |
|
| Q |
116 |
ggaataggagacaactacttacaagtaagatcatagaactttcggccttgatacctggattgaagaaggttagtatgtaat |
196 |
Q |
| |
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|||| ||||||| ||||||||| ||| ||||||||||||| || || ||||||||| |||||||||||||| |||||| |
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| T |
45083408 |
ggaacaggagacgtgaacttacaagaaagttcatagaactttcagcatttatacctggactgaagaaggttagtctgtaat |
45083328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 45083266 - 45083194
Alignment:
| Q |
234 |
tatagtagttatcattggatagaagctacaaactaaaaactatctaatgtctgtgtagattgataaggttcatgt |
308 |
Q |
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|||||||||||||||||||||||||||| ||| || | ||||||||| ||||||||| || ||||||||||| |
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| T |
45083266 |
tatagtagttatcattggatagaagctataaa--aagacttatctaatggctgtgtagacggacaaggttcatgt |
45083194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 16 - 248
Target Start/End: Original strand, 29375794 - 29376024
Alignment:
| Q |
16 |
catgattctttgcctttgtcatcatcaacagctaaacaagggtcaaattcgaagaagcctcgaaacacttcggatacactagatcacataatgtcagaga |
115 |
Q |
| |
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|||||||||||||||||||| ||||||| |||| |||||||| ||||| ||||||||| ||| | |||| || ||||||||||||||||||||||||| |
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| T |
29375794 |
catgattctttgcctttgtcgtcatcaatggctagccaagggtcgaattcaaagaagcctagaagcgcttctgagacactagatcacataatgtcagaga |
29375893 |
T |
|
| Q |
116 |
ggaataggagacaactacttacaagtaagatcatagaactttcggccttgatacctggattgaagaaggttagtatgtaatatattatattaaacctaga |
215 |
Q |
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| T |
29375894 |
ggaataggagacagctacttacaaggaagatcatagaactttcggcctttatacctggattaaagaaggtgagtttgtaatatattatattaaaccagga |
29375993 |
T |
|
| Q |
216 |
tgaatgagtaaatttttatatagtagttatcat |
248 |
Q |
| |
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|||||||||||||| ||||||||||||||| |
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| T |
29375994 |
caaatgagtaaatttt--tatagtagttatcat |
29376024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 241 - 351
Target Start/End: Original strand, 29377084 - 29377192
Alignment:
| Q |
241 |
gttatcattggatagaagctacaaactaaaaactatctaatgtctgtgtagattgataaggttcatgtggtaacggaagctatcaattacatgaaacagc |
340 |
Q |
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||||| |||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||| | |
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| T |
29377084 |
gttataattggatagaagctacaa--taaaaattatctaatggttgtgtagattgataaggttcatgtggtaacggaagctatcaattacgtaaaacaac |
29377181 |
T |
|
| Q |
341 |
ttgaagaacgt |
351 |
Q |
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| T |
29377182 |
ttgaagaacgt |
29377192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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