View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18752_low_11 (Length: 362)
Name: NF18752_low_11
Description: NF18752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18752_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 1940310 - 1940044
Alignment:
| Q |
11 |
cacagacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccattttcatt |
110 |
Q |
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| T |
1940310 |
cacacacagcattgtgttctagaacaaaaagggtctgcaaagttgtgacaccagcccaactattacgaatgtcacctgaaattgctgttccatcttcatt |
1940211 |
T |
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| Q |
111 |
atgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatcacacttcca |
210 |
Q |
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| T |
1940210 |
atgaagaagttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgtccaaaacttcttgattgcttccatatatcacacttcca |
1940111 |
T |
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| Q |
211 |
tccctattatcatatatatagtttcatg-catctcatgtgtaagttcaa-ttagaaggtcttaaatt |
275 |
Q |
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| T |
1940110 |
tccctattatcatatagtttcattcatgtcatgtcatgtgtaagttcaatttaaaaggtcttaaatt |
1940044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 18 - 331
Target Start/End: Complemental strand, 1954764 - 1954465
Alignment:
| Q |
18 |
agcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccattttcattatgaaga |
117 |
Q |
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| T |
1954764 |
agcattgtgttcttgaataaagagagcctgcaaagttgagacaccagcccaactattgcgaacgtcacctgaaattgctactccattttcattttgctta |
1954665 |
T |
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| Q |
118 |
agttcaccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatcacacttccatccctat |
217 |
Q |
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| T |
1954664 |
agggtaccatcgtctaatatttttaacttcccatctttgaaagttctcactttgttcaaaacttcttgattgcttccatatatcacacttccatccctat |
1954565 |
T |
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| Q |
218 |
tatcatatatatagtttcatgcatctcatgtgtaagttcaattagaaggtcttaaattgagactatatatctaattaagtataattactagacaaaatta |
317 |
Q |
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| T |
1954564 |
tatca----tatagtttcatgcatgtcatgtgtaagttcaattagaaggtcttaaattgagacta----------taagtataattactagacaaaatta |
1954479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 6 - 215
Target Start/End: Complemental strand, 1925988 - 1925776
Alignment:
| Q |
6 |
agcagcacagacagcattgtgttcttgaataaaaagagcctgcaaagttgagacaccagcccaactattgcgaacatcacctgaaattgctgttccattt |
105 |
Q |
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| T |
1925988 |
agcatcacaaacagcattgtgttcttgaatgaaaagggcttgcaaagttgaaacaccagcccaactattgcgaacatcacctgaaattgcaactccatct |
1925889 |
T |
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| Q |
106 |
tcattatgaagaagttca---ccttcctttgatattttgattttaccatctttgaaagtcctcactttgttcaaaacttcttgattgcttccatatatca |
202 |
Q |
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| T |
1925888 |
tcgttttgtagaagatgatttccttcctttgatatttttaacttcccatcttgggaagtcctcacttgggtcaaaatttcatcattgcttccatatatca |
1925789 |
T |
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| Q |
203 |
cacttccatccct |
215 |
Q |
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| T |
1925788 |
cacttccatccct |
1925776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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