View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18752_low_12 (Length: 350)
Name: NF18752_low_12
Description: NF18752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18752_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 3548442 - 3548766
Alignment:
| Q |
16 |
aataaagcattctctctatacttctgaattttgatggagaaacattttgctttttccttccattttcaggaaatgtttccaattattcattgtcagtttc |
115 |
Q |
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| T |
3548442 |
aataaagcattctctctatacttctgaattttgatggagaaacattttgctttttccttccattttcaggaaatgtttccaattattcattgtcagtttc |
3548541 |
T |
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| Q |
116 |
ttgaattaatgcagctgctgttttcggtgaacaaaagcgcctagagccaatgccaccggaaaggaaagcaagatggagaaaagaaattgattggcttctt |
215 |
Q |
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| T |
3548542 |
ttgaattaatgcagctgctgttttcggtgaacaaaagcgcctagagccaatgccaccggaaaggaaagcaagatggagaaaagaaattgattggcttctt |
3548641 |
T |
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| Q |
216 |
tcggtcaccgattacgttgttgaaatggttccaacacagcagaaatccaaggatggttcaatcatggaggtnnnnnnnnnncattctctttgttctcccc |
315 |
Q |
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| T |
3548642 |
tcggtcaccgattacgttgttgaaatggttccaacacagcagaaatccaaggatggttcaatcatggaggt-aaaaaaaaacattctctttgttctcccc |
3548740 |
T |
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| Q |
316 |
atatgtttagttcatcacattcttct |
341 |
Q |
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| T |
3548741 |
atatgtttagttcatcacattcttct |
3548766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 136 - 271
Target Start/End: Complemental strand, 43812668 - 43812533
Alignment:
| Q |
136 |
ttttcggtgaacaaaagcgcctagagccaatgccaccggaaaggaaagcaagatggagaaaagaaattgattggcttctttcggtcaccgattacgttgt |
235 |
Q |
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||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| |||||| || ||||| ||||| ||||| |
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| T |
43812668 |
ttttcggtgaacaaaagcgcctagaaccaatgccagcagaaaggaaagcaagatggagaaaagaaattgatttgcttctatcagtcacagattatgttgt |
43812569 |
T |
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| Q |
236 |
tgaaatggttccaacacagcagaaatccaaggatgg |
271 |
Q |
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| T |
43812568 |
tgaaatggttccttcacagcaaaaatctaaggatgg |
43812533 |
T |
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