View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18752_low_13 (Length: 347)
Name: NF18752_low_13
Description: NF18752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18752_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 42741805 - 42741486
Alignment:
| Q |
10 |
gaagaatatgatgagaagttttgaaacaatgttgctagcatgtggaagtaatgaagttaa-ggaaattcatggtaccttaacaatggtgcaagcaaccat |
108 |
Q |
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| T |
42741805 |
gaagaaaatgatgagaagttttgaaacaatgttgctagcatgtggaagtaatgaagttaaaggaaattcatggtaccttaacaatggtgcaagcaaccat |
42741706 |
T |
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| Q |
109 |
atgtgcgaacaaatgagcatatatattcttggatcttgatgaatcagtaagtgacaattaatgtctcatttggtggtgatgtaaaaattctcgtgaaagn |
208 |
Q |
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| T |
42741705 |
atgtgcgaacaaatgagcatatatattcttggatcttgatgaatcagtaagtgacaattaatgtctcatttggtggtgatgtaaaaattctcatgaaag- |
42741607 |
T |
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| Q |
209 |
nnnnnnngtatgtaatatcttaatccaaatgcctttactaccttcaaggaagttcaaagatgttgtcacgaaagtaagtggtcagcatataaaagttacg |
308 |
Q |
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| T |
42741606 |
-aaaaaagtatgtaatatcttaatccaaatgcctttactaccttcaaggaagttcaaagatgttgtcacgaaaggaagtggtcagcatataaaagttacg |
42741508 |
T |
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| Q |
309 |
aggactggtcgaggaggtgaat |
330 |
Q |
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| T |
42741507 |
aggactggtcgaggaggtgaat |
42741486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 21745917 - 21745606
Alignment:
| Q |
17 |
atgatgagaagttttgaaacaatgttgctagcatgtggaagtaatgaagttaaggaaattcatggtaccttaacaatggtgcaagcaaccatatgtgcga |
116 |
Q |
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| T |
21745917 |
atgatgagaagttttgaaacaatgttgctagcatgtggaagtaatgaagttaaggaaattcatggtaccttaacaatggtgcaagcaaccatatgtgcga |
21745818 |
T |
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| Q |
117 |
acaaatgagcatatatattcttggatcttgatgaatcagtaagtgacaattaatgtctcatttggtggtgatgtaaaaattctcgtgaaagnnnnnnnng |
216 |
Q |
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| T |
21745817 |
acaaatgagcatatatattcttggatcttgatgaatcagtaagtgac----aatgtctcatttggtggtgatgtaaaaattctcatgaaag--aaaaaag |
21745724 |
T |
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| Q |
217 |
tatgtaatatcttaatccaaatgcctttac----taccttcaaggaagttcaaagatgttgtcacgaaagtaagtggtcagcatataaaagttacgagga |
312 |
Q |
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| T |
21745723 |
tatgtaatatcttaatccaaatgcctttactatttaccttcaaggaagttcaaagatgttgtcacgaaaggaagtggtcagcatataaaagttacgagga |
21745624 |
T |
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| Q |
313 |
ctggtcgaggaggtgaat |
330 |
Q |
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| T |
21745623 |
ctggtcgaggaggtgaat |
21745606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 4890721 - 4890685
Alignment:
| Q |
29 |
tttgaaacaatgttgctagcatgtggaagtaatgaag |
65 |
Q |
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| T |
4890721 |
tttgaaacaatgctgctagcacgtggaagtaatgaag |
4890685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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