View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18752_low_20 (Length: 201)
Name: NF18752_low_20
Description: NF18752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18752_low_20 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 26 - 184
Target Start/End: Complemental strand, 93726 - 93565
Alignment:
| Q |
26 |
cgtaacttaaaatgattatataatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaag |
125 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
93726 |
cgtaacttaaaatgattatacaatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttgatattttgtgtttgcaggaag |
93627 |
T |
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| Q |
126 |
agcaaacaaatgagcaggtgatgatggaaa---aaatagcacaaaagaggataattttatat |
184 |
Q |
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| T |
93626 |
agcaaacaaatgagcaggtgatgatggaaagggaaatagcacaaaagaggagaattttatat |
93565 |
T |
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Target: chr7 (Bit Score: 132; Significance: 9e-69; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 42301787 - 42301610
Alignment:
| Q |
10 |
gtagataatactgtaacgtaacttaaaatgattatataatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttcatatt |
109 |
Q |
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| T |
42301787 |
gtagataatattgtaacataacttaaaatgattatacgatgtgatatcataacttattccacctcaaagtttgttttgctttgataagtaatttcatatt |
42301688 |
T |
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| Q |
110 |
ttgtgtttgcaggaagagcaaacaaatgagcaggtgatgatggaaa---aaatagcacaaaagaggataattttatat |
184 |
Q |
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| T |
42301687 |
ttgtgtttgcaggaagagcaaacaaatgagcaggtgatgatggaaagggaaatagcacaaaagaggagaattttatat |
42301610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 10 - 170
Target Start/End: Original strand, 31295148 - 31295311
Alignment:
| Q |
10 |
gtagataatactgtaacgtaacttaaaatgattatataatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttcatatt |
109 |
Q |
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| T |
31295148 |
gtagataatattgtgatgcaacttaaaatgattatacgatgcgatatcatatcttattccacctcaatgtttgttttgctttgataagtaacttcatatt |
31295247 |
T |
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| Q |
110 |
ttgtgtttgcaggaagagcaaacaaatgagcaggtgatgatggaaa---aaatagcacaaaaga |
170 |
Q |
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| T |
31295248 |
ttgtgtttgcaggaagagcaaaccaatgagcaggtgatgatggaaagggaaatagcacaaaaga |
31295311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 10 - 184
Target Start/End: Complemental strand, 2368008 - 2367831
Alignment:
| Q |
10 |
gtagataatactgtaacgtaacttaaaatgattatataatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttcatatt |
109 |
Q |
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|||||||||| ||||||||| | |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2368008 |
gtagataatattgtaacgtagcataaaattattatacgatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatatt |
2367909 |
T |
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| Q |
110 |
ttgtgtttgcaggaagagcaaacaaatgagcaggtgatgatggaaa---aaatagcacaaaagaggataattttatat |
184 |
Q |
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| T |
2367908 |
ttatgtttgcatgaagagcaaacaaatgagcaggcgatgatggaaagggaaatagcacaaaagaggagaattttatat |
2367831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 155
Target Start/End: Original strand, 2777381 - 2777434
Alignment:
| Q |
102 |
ttcatattttgtgtttgcaggaagagcaaacaaatgagcaggtgatgatggaaa |
155 |
Q |
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| T |
2777381 |
ttcatattttgtgtttgcaggaagaccaaaaaggtgagcaagtgatgatggaaa |
2777434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 37 - 184
Target Start/End: Original strand, 18314373 - 18314523
Alignment:
| Q |
37 |
atgattatataatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaacaaat |
136 |
Q |
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| T |
18314373 |
atgattatacgatgcaatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttgtgtttgcaggaagagcaaacaaat |
18314472 |
T |
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| Q |
137 |
gagcaggtgatgatggaaa---aaatagcacaaaagaggataattttatat |
184 |
Q |
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| T |
18314473 |
gagcaggtgatgatggaaagggaaatagcacaaaagaggagaattttatat |
18314523 |
T |
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Target: chr3 (Bit Score: 117; Significance: 8e-60; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 37 - 184
Target Start/End: Complemental strand, 22761898 - 22761748
Alignment:
| Q |
37 |
atgattatataatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaacttcatattttgtgtttgcaggaagagcaaacaaat |
136 |
Q |
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| T |
22761898 |
atgattatacgatgcgatatcataacttattccacctcaatgtttgttttgctttgataagtaatttcatattttgtgtttgcaggaagagcaaacaaat |
22761799 |
T |
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| Q |
137 |
gagcaggtgatgatggaaa---aaatagcacaaaagaggataattttatat |
184 |
Q |
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| T |
22761798 |
gagcaagtgatgatggaaagggaaatagcacaaaagaggagaattttatat |
22761748 |
T |
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