View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18752_low_4 (Length: 451)
Name: NF18752_low_4
Description: NF18752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18752_low_4 |
 | |
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| [»] scaffold0036 (1 HSPs) |
| | |
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| [»] scaffold0891 (1 HSPs) |
| | |
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| [»] scaffold2086 (1 HSPs) |
| | |
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| [»] scaffold1996 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 26901516 - 26901113
Alignment:
| Q |
18 |
agttttaggtcattcatcaattggagggtttttgacacatagtggttggaattcaacgttagaaagtgtttgtggtggtgttccaatgatatgttggcct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26901516 |
agttttaggtcattcatcaattggagggtttttgacacatagtggttggaattcaacgttagaaagtgtttgtggtggtgttccaatgatatgttggcct |
26901417 |
T |
|
| Q |
118 |
ttctttgctgaacaacaaactaattgtagattttgttgtaatgaatggggcattggtttggagattgaagatgctaagagggataagattgagggtcttg |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
26901416 |
ttttttgctgaacaacaaactaattgtagattttgttgtaatgaatgggggattggtttggaaattgaagatgctaagagggataaaattgagattcttg |
26901317 |
T |
|
| Q |
218 |
tgagggaattgatggatggagaaaagggtaaagaaatgaaagagaaagctttgaggttgaaagaattggcacattataatgcttatggggcatttggatc |
317 |
Q |
| |
|
||| ||| || ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26901316 |
tgaaggagttaatggaaggagaaaagggtaaagaaatgaaagagaaagctttgaggttgaaagaattggcacatgataatgcttatggggcatttggatc |
26901217 |
T |
|
| Q |
318 |
ttcattggtgaatttggacaacatgattcgtcacgtgctattattgtcataaatttccaaaatgttactttcctagtgtgttgttatgtgtctccgtggg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
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|
| T |
26901216 |
ttcattggtgaatttggacaacatgattcatcacgtgctattattgtcataaatttccaaaatgttactttcgtagtgtgttgttatgtgtctatgtggg |
26901117 |
T |
|
| Q |
418 |
ttct |
421 |
Q |
| |
|
|||| |
|
|
| T |
26901116 |
ttct |
26901113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 26672230 - 26671978
Alignment:
| Q |
18 |
agttttaggtcattcatcaattggagggtttttgacacatagtggttggaattcaacgttagaaagtgtttgtggtggtgttccaatgatatgttggcct |
117 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26672230 |
agttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgtttgtggtggtgttccaatgatatgttggcct |
26672131 |
T |
|
| Q |
118 |
ttctttgctgaacaacaaactaattgtagattttgttgtaatgaatggggcattggtttggagattgaagatgctaagagggataagattgagggtcttg |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||| ||||| |
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|
| T |
26672130 |
ttttttgctgaacaacaaactaattgtagattttgttgtaatgaatgggggattggtttggagattgaagatgctaagagggacaaaatagagattcttg |
26672031 |
T |
|
| Q |
218 |
tgagggaattgatggatggagaaaagggtaaagaaatgaaagagaaagctttg |
270 |
Q |
| |
|
||| ||| || ||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
26672030 |
tgaaggagttaatggaaggagaaaagggtaaagagatgaaagaaaaagctttg |
26671978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 26943828 - 26943576
Alignment:
| Q |
18 |
agttttaggtcattcatcaattggagggtttttgacacatagtggttggaattcaacgttagaaagtgtttgtggtggtgttccaatgatatgttggcct |
117 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26943828 |
agttttgggacattcatcaattggagggtttttgacacataatggttggaattcaacgttggaaagtgtttgtggtggtgttccaatgatatgttggcct |
26943729 |
T |
|
| Q |
118 |
ttctttgctgaacaacaaactaattgtagattttgttgtaatgaatggggcattggtttggagattgaagatgctaagagggataagattgagggtcttg |
217 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || || ||| ||||| |
|
|
| T |
26943728 |
ttttttgctgaacaacaaactaattgtagattttgttgtaatgaatgggggattggtttggagattgaagatgctaagagggacaaaatagagattcttg |
26943629 |
T |
|
| Q |
218 |
tgagggaattgatggatggagaaaagggtaaagaaatgaaagagaaagctttg |
270 |
Q |
| |
|
||| ||| || ||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
26943628 |
tgaaggagttaatggaaggagaaaagggtaaagagatgaaagaaaaagctttg |
26943576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 13648186 - 13648286
Alignment:
| Q |
46 |
tttttgacacatagtggttggaattcaacgttagaaagtgtttgtggtggtgttccaatgatatgttggcctttctttgctgaacaacaaactaattgta |
145 |
Q |
| |
|
||||||||||||| ||| ||||||||||| || |||||||| | ||||||| || |||||||||||||||| |||||||| ||||||| |||| ||| |
|
|
| T |
13648186 |
tttttgacacataatgggtggaattcaactttggaaagtgtggtttgtggtgtgcctatgatatgttggccttattttgctgatcaacaaattaatagta |
13648285 |
T |
|
| Q |
146 |
g |
146 |
Q |
| |
|
| |
|
|
| T |
13648286 |
g |
13648286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 146
Target Start/End: Original strand, 13658714 - 13658814
Alignment:
| Q |
46 |
tttttgacacatagtggttggaattcaacgttagaaagtgtttgtggtggtgttccaatgatatgttggcctttctttgctgaacaacaaactaattgta |
145 |
Q |
| |
|
||||||||||||||||| |||||||| || || || ||||| | ||||||| || |||||||||||||||| |||||||| ||||||| |||| ||| |
|
|
| T |
13658714 |
tttttgacacatagtggatggaattctactttggagagtgtggtttgtggtgtgcctatgatatgttggccttattttgctgatcaacaaattaatagta |
13658813 |
T |
|
| Q |
146 |
g |
146 |
Q |
| |
|
| |
|
|
| T |
13658814 |
g |
13658814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 40 - 270
Target Start/End: Original strand, 91434 - 91664
Alignment:
| Q |
40 |
ggagggtttttgacacatagtggttggaattcaacgttagaaagtgtttgtggtggtgttccaatgatatgttggcctttctttgctgaacaacaaacta |
139 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||||| || ||||| |||| ||||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
91434 |
ggaggattcttgacacatagtggttggaattcgacgttggagagtgtgtgtgccggtgttccaatgatatgttggccgttctttgcggagcaacaaacta |
91533 |
T |
|
| Q |
140 |
attgtagattttgttgtaatgaatggggcattggtttggagattgaagatgctaagagggataagattgagggtcttgtgagggaattgatggatggaga |
239 |
Q |
| |
|
||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||| || |||||| | ||||||| ||| ||| ||||||| || |
|
|
| T |
91534 |
attgtaggttttgttgtaatgagtgggagattggtttggagattgaagatgctaagagggacaaaattgagagccttgtgaaggagttgttggatggtga |
91633 |
T |
|
| Q |
240 |
aaagggtaaagaaatgaaagagaaagctttg |
270 |
Q |
| |
|
|||||||||||| ||||||| ||||||||| |
|
|
| T |
91634 |
aaagggtaaagagatgaaagcaaaagctttg |
91664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 37399309 - 37399191
Alignment:
| Q |
26 |
gtcattcatcaattggagggtttttgacacatagtggttggaattcaacgttagaaagtgtttgtggtggtgttccaatgatatgttggcctttctttgc |
125 |
Q |
| |
|
||||||||| |||||||| ||||| || ||| |||| ||||| ||||| || ||||| |||||| ||||| ||| || ||||||||||| ||||| |
|
|
| T |
37399309 |
gtcattcatgtattggaggctttttaactcattgtggatggaactcaacattggaaagcatttgtgagggtgtgccattggcttgttggcctttttttgc |
37399210 |
T |
|
| Q |
126 |
tgaacaacaaactaattgt |
144 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
37399209 |
tgaacaacaaactaattgt |
37399191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 3505 - 3542
Alignment:
| Q |
109 |
tgttggcctttctttgctgaacaacaaactaattgtag |
146 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3505 |
tgttggcctttctttgctgaacaacaaacaaattgtag |
3542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2086 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2086
Description:
Target: scaffold2086; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 368 - 405
Alignment:
| Q |
109 |
tgttggcctttctttgctgaacaacaaactaattgtag |
146 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
368 |
tgttggcctttctttgctgagcaacaaacaaattgtag |
405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1996 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1996
Description:
Target: scaffold1996; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 368 - 405
Alignment:
| Q |
109 |
tgttggcctttctttgctgaacaacaaactaattgtag |
146 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
368 |
tgttggcctttctttgctgagcaacaaacaaattgtag |
405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 35866038 - 35866001
Alignment:
| Q |
109 |
tgttggcctttctttgctgaacaacaaactaattgtag |
146 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
35866038 |
tgttggcctttctttgctgagcaacaaacaaattgtag |
35866001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 146
Target Start/End: Complemental strand, 35735623 - 35735587
Alignment:
| Q |
110 |
gttggcctttctttgctgaacaacaaactaattgtag |
146 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
35735623 |
gttggcctttctttgctgagcaacaaacaaattgtag |
35735587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 27224203 - 27224154
Alignment:
| Q |
46 |
tttttgacacatagtggttggaattcaacgttagaaagtgtttgtggtgg |
95 |
Q |
| |
|
|||||||||||| |||||||||||||||| || ||| || |||||||||| |
|
|
| T |
27224203 |
tttttgacacattgtggttggaattcaacattggaaggtatttgtggtgg |
27224154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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