View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18752_low_5 (Length: 429)
Name: NF18752_low_5
Description: NF18752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18752_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 273
Target Start/End: Complemental strand, 26284570 - 26284314
Alignment:
| Q |
17 |
cactacaaaatatttaaattaaattattaggtgaaaacataacattatttttctcttaactcattctttcacaaagacttttcacttcaagaatggataa |
116 |
Q |
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| T |
26284570 |
cactacaaaatatttaaattaaattattaggtgaaaatataacattatttttctcttaactcattctttcacaaagacttttcacttcaagaaaggataa |
26284471 |
T |
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| Q |
117 |
taattataagctccatgaaatnnnnnnnttggataataaataacgagtctatcatctgcacctcaaacttttaaaattcatattctaatatattactggt |
216 |
Q |
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| T |
26284470 |
taattataagctccatgaaataaaaaaattggataataaattacgagtctatcatctgcacctcaaacttttaaaattcatattctaatatattattggt |
26284371 |
T |
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| Q |
217 |
taattattattaaagtttaaagtaaggacaattgaatcaatattatattgtatcttt |
273 |
Q |
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| T |
26284370 |
caattattattaaagtttaaagtaaggacaattgaatcaatattatattgtatcttt |
26284314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 318 - 412
Target Start/End: Complemental strand, 26284269 - 26284175
Alignment:
| Q |
318 |
gtgaatatatatgagggagaaaatctaccttagccctatgataataattttgtccgatgaataaatcatcaatttattttctaaaacatcattct |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
26284269 |
gtgaatatatatgagggagaaaatctaccttagccctatgataataattttgttcgatgaataaatcatcaatttattttctaaaacatcattct |
26284175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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