View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18752_low_6 (Length: 417)
Name: NF18752_low_6
Description: NF18752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18752_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 25005835 - 25006050
Alignment:
| Q |
17 |
atgaaaataagtgtctgatgaatcaaatgtttatatctcaagctcatcatctatatcaagtgctagagttttctattccaaaactgagtctttgttcctc |
116 |
Q |
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| T |
25005835 |
atgaaaataagtgtctgatgaatcaaatgtttatatctcaagctcatcatctatatcaagtggtagagttttctattccaaaactgagtctttgttcctc |
25005934 |
T |
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| Q |
117 |
tgcaccatgatcaaaataataatgataaacaactaaaagtgaactatatataaacatcatgaaaaggagcctccaaatatttgttgaactggtccatgta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25005935 |
tgcaccatgatcaaaataataatgataaacaactaaaagtgaac----tataaacatcatgtaaaggagcctccaaatatttgttgaactggtccatgta |
25006030 |
T |
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| Q |
217 |
caaaaacacacagattaaat |
236 |
Q |
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|||||||||||||||||||| |
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| T |
25006031 |
caaaaacacacagattaaat |
25006050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 237 - 387
Target Start/End: Original strand, 25006366 - 25006516
Alignment:
| Q |
237 |
attcgccgcagaacaacactgaaagcctccaaattgtcgagatgattcaaagtctatcttaatactctatgacaaataaagctagttaaaattcaaatgt |
336 |
Q |
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|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25006366 |
attcgctgcagaacaacaccgaaagcctccaaattgtcgagatgattcaaagtctatcttaatactctatgacaaataaagctagttaaaattcaaatgt |
25006465 |
T |
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| Q |
337 |
agaggagtaaatcagcaccccatgcaaagctaaaatgaaattatgcagaga |
387 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25006466 |
agaggagtaaatcagcacctcatgcaaagctaaaatgaaattatgcagaga |
25006516 |
T |
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