View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18752_low_7 (Length: 411)

Name: NF18752_low_7
Description: NF18752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18752_low_7
NF18752_low_7
[»] chr2 (2 HSPs)
chr2 (53-394)||(27633955-27634297)
chr2 (13-63)||(27633713-27633763)
[»] chr7 (3 HSPs)
chr7 (52-355)||(7444617-7444920)
chr7 (16-60)||(7444368-7444412)
chr7 (216-298)||(8112103-8112182)
[»] chr4 (3 HSPs)
chr4 (112-355)||(49377422-49377665)
chr4 (53-159)||(49377663-49377769)
chr4 (16-60)||(49377975-49378019)
[»] chr6 (2 HSPs)
chr6 (261-343)||(7957893-7957975)
chr6 (16-60)||(7957617-7957661)
[»] chr5 (3 HSPs)
chr5 (264-339)||(3804624-3804699)
chr5 (16-60)||(3804934-3804978)
chr5 (53-85)||(3804696-3804728)
[»] chr3 (2 HSPs)
chr3 (17-63)||(39134336-39134382)
chr3 (216-289)||(39716565-39716638)


Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 53 - 394
Target Start/End: Original strand, 27633955 - 27634297
Alignment:
Q  53 caaaaatgctatctttaccaacatatattcacaaaagcctatgcatcacagtacatttatattctcatttatgtcttgttacttatcaagttttaacaat 152  Q
    |||||||| ||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||     
T  27633955 caaaaatgttatctttacaaacatatatccacaaaagcttatgcatcacagtacatttatattctcatttatgtcttgttccttatcaagttttaacaac 27634054  T
Q  153 atactatcagtgacttttacccaatgcatcnnnnnnncttaactcagaagttcttatccaaaggtcaagaacaatgagcataaatgcaaaaaatcacagt 252  Q
    ||||||||||||||||||||||||||||||       |||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  27634055 atactatcagtgacttttacccaatgcatctttttttcttttctcagaagttcttatccaaaggtcaagaacaatgagcataaatgcaaacaatcacagt 27634154  T
Q  253 gatattaaatccacaatagcttcttgtcaatttaat-gaaaaataaacgtacctacttaatatcaaggaaataatgtgatttctgtcggaacctacttca 351  Q
    ||||||||||||||||||||||||||||||||||||  ||||| ||||| |||||||||| ||||||| |||||||||||||||||  |||||| || ||    
T  27634155 gatattaaatccacaatagcttcttgtcaatttaataaaaaaaaaaacgcacctacttaacatcaagggaataatgtgatttctgttagaacctgctcca 27634254  T
Q  352 cctacttaacataaagagcaacaattttcttcattgatggagc 394  Q
    |||||||||||| ||||||||||||||||||| ||||||||||    
T  27634255 cctacttaacatcaagagcaacaattttcttctttgatggagc 27634297  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 27633713 - 27633763
Alignment:
Q  13 aatattctgaacaacaaacaagaaagtggatcaacatcctcaaaaatgcta 63  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  27633713 aatattttgaacaacaaacaagaaagtggatcaacatcctcaaaaatgcta 27633763  T

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Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 52 - 355
Target Start/End: Original strand, 7444617 - 7444920
Alignment:
Q  52 tcaaaaatgctatctttaccaacatatattcacaaaagcctatgcatcacagtacatttatattctcatttatgtcttgttacttatcaagttttaacaa 151  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  7444617 tcaaaaatgctatctttaccaacatatatccacaaaagcttatccatcacagtacagttatattctcatttatgtcttgttgcttatcaagttttaacaa 7444716  T
Q  152 tatactatcagtgacttttacccaatgcatcnnnnnnncttaactcagaagttcttatccaaaggtcaagaacaatgagcataaatgcaaaaaatcacag 251  Q
     ||||||| ||||||||||||||||||||||       |||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  7444717 catactattagtgacttttacccaatgcatctttttttcttatctcagaagttcttatccataggtcaagaacaatgagcataaatgcaaacaatcacag 7444816  T
Q  252 tgatattaaatccacaatagcttcttgtcaatttaatgaaaaataaacgtacctacttaatatcaaggaaataatgtgatttctgtcggaacctacttca 351  Q
    |||||| |||||||||||||||| ||||||||||||||||||| ||| |||||||||||| ||||||| ||||||||||||||||||||||||| || ||    
T  7444817 tgatatcaaatccacaatagcttattgtcaatttaatgaaaaagaaaagtacctacttaacatcaagggaataatgtgatttctgtcggaacctgctcca 7444916  T
Q  352 ccta 355  Q
    ||||    
T  7444917 ccta 7444920  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 7444368 - 7444412
Alignment:
Q  16 attctgaacaacaaacaagaaagtggatcaacatcctcaaaaatg 60  Q
    |||||||||||||||  |||||||||||||||||||| |||||||    
T  7444368 attctgaacaacaaatgagaaagtggatcaacatcctgaaaaatg 7444412  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 298
Target Start/End: Original strand, 8112103 - 8112182
Alignment:
Q  216 gtcaagaacaatgagcataaatgcaaaaaatcacagtgatattaaatccacaatagcttcttgtcaatttaat-gaaaaataaa 298  Q
    ||||||||||| |||||| ||  |||||||||| ||||||||    |||||||||  |||||||||||||||| ||||||||||    
T  8112103 gtcaagaacaacgagcatcaaatcaaaaaatcatagtgatat----tccacaatattttcttgtcaatttaatagaaaaataaa 8112182  T

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Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 112 - 355
Target Start/End: Complemental strand, 49377665 - 49377422
Alignment:
Q  112 tattctcatttatgtcttgttacttatcaagttttaacaatatactatcagtgacttttacccaatgcatcnnnnnnncttaactcagaagttcttatcc 211  Q
    ||||||||||||||||||||| |||||||||||||||||| ||| ||||| ||||||||||||||||||||       |||| |||||||||||||||||    
T  49377665 tattctcatttatgtcttgttgcttatcaagttttaacaaaatattatcattgacttttacccaatgcatctttttttcttatctcagaagttcttatcc 49377566  T
Q  212 aaaggtcaagaacaatgagcataaatgcaaaaaatcacagtgatattaaatccacaatagcttcttgtcaatttaatgaaaaataaacgtacctacttaa 311  Q
    | ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  49377565 ataggtcaagaacaatgagcataaatgcaaacaatcacagtgatatcaaatccacaatagcttcttgtcaatttaatgaaaaagaaacgtacctacttaa 49377466  T
Q  312 tatcaaggaaataatgtgatttctgtcggaacctacttcaccta 355  Q
     ||||||| ||||||||||||||||||||||||| || ||||||    
T  49377465 catcaagggaataatgtgatttctgtcggaacctgctccaccta 49377422  T

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Target: chr4; HSP #2
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 49377769 - 49377663
Alignment:
Q  53 caaaaatgctatctttaccaacatatattcacaaaagcctatgcatcacagtacatttatattctcatttatgtcttgttacttatcaagttttaacaat 152  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||     
T  49377769 caaaaatgctatctttaccaacatatatcaacaaaagcttatgcatcacaatacagttatattctcatttatgtcttgttgcttatcaagttttaacaac 49377670  T
Q  153 atactat 159  Q
    |||||||    
T  49377669 atactat 49377663  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 49378019 - 49377975
Alignment:
Q  16 attctgaacaacaaacaagaaagtggatcaacatcctcaaaaatg 60  Q
    |||||||||||||||  |||||||||||||||||||| |||||||    
T  49378019 attctgaacaacaaatgagaaagtggatcaacatcctgaaaaatg 49377975  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 261 - 343
Target Start/End: Original strand, 7957893 - 7957975
Alignment:
Q  261 atccacaatagcttcttgtcaatttaatgaaaaataaacgtacctacttaatatcaaggaaataatgtgatttctgtcggaac 343  Q
    ||||||| |||||||||||||||| ||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||    
T  7957893 atccacactagcttcttgtcaattaaatgaaaaagaaacgtacctacttaacatcaagggaataatgtgatttctgtcggaac 7957975  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 7957617 - 7957661
Alignment:
Q  16 attctgaacaacaaacaagaaagtggatcaacatcctcaaaaatg 60  Q
    |||||||||||||||| |||||||||||||||||||| |||||||    
T  7957617 attctgaacaacaaacgagaaagtggatcaacatcctgaaaaatg 7957661  T

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Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 264 - 339
Target Start/End: Complemental strand, 3804699 - 3804624
Alignment:
Q  264 cacaatagcttcttgtcaatttaatgaaaaataaacgtacctacttaatatcaaggaaataatgtgatttctgtcg 339  Q
    |||| |||||||||||||||| ||||||||| |||||||||||||||| ||||||| |||||||||||||||||||    
T  3804699 cacactagcttcttgtcaattaaatgaaaaagaaacgtacctacttaacatcaagggaataatgtgatttctgtcg 3804624  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 3804978 - 3804934
Alignment:
Q  16 attctgaacaacaaacaagaaagtggatcaacatcctcaaaaatg 60  Q
    |||||||||||||||| |||||||||||||||||||| |||||||    
T  3804978 attctgaacaacaaacgagaaagtggatcaacatcctgaaaaatg 3804934  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 3804728 - 3804696
Alignment:
Q  53 caaaaatgctatctttaccaacatatattcaca 85  Q
    |||||||||||||||| ||||||||||||||||    
T  3804728 caaaaatgctatctttgccaacatatattcaca 3804696  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 39134336 - 39134382
Alignment:
Q  17 ttctgaacaacaaacaagaaagtggatcaacatcctcaaaaatgcta 63  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||    
T  39134336 ttctgaacaacaaacgagaaagtggatcaacatcctgaaaaatgcta 39134382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 289
Target Start/End: Original strand, 39716565 - 39716638
Alignment:
Q  216 gtcaagaacaatgagcataaatgcaaaaaatcacagtgatattaaatccacaatagcttcttgtcaatttaatg 289  Q
    ||||||| ||||||| || ||  |||| ||||| ||||||||||  |||||||||  |||||||||||||||||    
T  39716565 gtcaagagcaatgagtatcaaatcaaacaatcatagtgatattacttccacaatattttcttgtcaatttaatg 39716638  T

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