View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18752_low_9 (Length: 380)
Name: NF18752_low_9
Description: NF18752
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18752_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 22 - 368
Target Start/End: Original strand, 49723389 - 49723736
Alignment:
| Q |
22 |
actgtggcatactggccataagtggttgtgatcnnnnnnn-tacatctgctcccaaaagcatccaactaagaaagatgccatcctaacattctttaatag |
120 |
Q |
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| T |
49723389 |
actgtggcatactggccataagtggttgtgatcaaaaaaaatacatctgctcccaatagcatccaactaggaaagatgccatccaaacagtctttaatag |
49723488 |
T |
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| Q |
121 |
ttacatacgtggaaggtaatatcatcacggtctcagatgaaacacagcggaagtatttgctatccaaaaaatgccaagcctttcacaattatcctgttcc |
220 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49723489 |
ttacatacgtggaaggtaataccatcacggtctcagatgaaacacagcagaagtatttgctatccaaaaaatgccaagcctttcacaattatcctgttcc |
49723588 |
T |
|
| Q |
221 |
tcgcactactcctttgggttctttctacatcaaatttaatataactatgttcaaatgcaatcgctcccttaaggtcacccctccaaaatcatttcaaaac |
320 |
Q |
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| T |
49723589 |
tcccactactcctttgggttctttctacatcaaatttaatataactatgttcaaatgcaatcgctcccttaaggtcacccctccaaaatcatttcaaaac |
49723688 |
T |
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| Q |
321 |
tacgcaaactgttccggttatgatatctactattaccttcaaaatatt |
368 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49723689 |
tacgcaaactgttccggttatgatatctactatgaccttcaaaatatt |
49723736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 22 - 368
Target Start/End: Original strand, 49673485 - 49673831
Alignment:
| Q |
22 |
actgtggcatactggccataagtggttgtgatcnnnnnnntacatctgctcccaaaagcatccaactaagaaagatgccatcctaacattctttaatagt |
121 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||| |
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| T |
49673485 |
actgtggcatactggccataagtggttgtgataaaaaaaatacatctgctcccaaaagcatccaactaggaaagatgccatccaaacagcctttaatagt |
49673584 |
T |
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| Q |
122 |
tacatacgtggaaggtaatatcatcacggtctcagatgaaacacagcggaagtatttgctatccaaaaaatgccaagcctttcacaattatcctgttcct |
221 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49673585 |
tacatacgtggaaggtaataccatcacggtctcagataaaacacagcggaagtatttgctatccaaaaaatgccaagcctttcacaattatcctgttcct |
49673684 |
T |
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| Q |
222 |
cgcactactcctttgggttctttctacatcaaatttaatataactatgttcaaatgcaatcgctcccttaaggtcacccctccaaaatcatttcaaaact |
321 |
Q |
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| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49673685 |
cccactactcctttgggttctttctacctcaaatttaatataactatgttcaaatgcaatcgctcccttaaggtcacccctccaaaatcatttcaaaact |
49673784 |
T |
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| Q |
322 |
acgcaaactgttccggttatgatatctactattaccttcaaaatatt |
368 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49673785 |
acgcaaactgttccggttatgatatctactatgaccttcaaaatatt |
49673831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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