View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18753_high_22 (Length: 238)
Name: NF18753_high_22
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18753_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 33952657 - 33952864
Alignment:
| Q |
18 |
atagtgtattgtctctttattcagaagcaagaagagtttttcccgctgagagggtgcataaagcatgtcttcaaatccacatatatttcatcttcatttc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33952657 |
atagtgtattgtctctttattcagaagcaagaagagtttttctcgctgagagggtgcataaagcatgtcttcaaatccacatatatttcatctccatttc |
33952756 |
T |
|
| Q |
118 |
aatgaatatatgatgctccacgatagtatactag-----tatattatattcttatctattactattactgctactcattctctatgttcatttatgtgat |
212 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33952757 |
aatgaatatatgatgctccacgatagtatactagtatattatattatattcttatctattactattactgctactcattctctatgttcatttatgtgat |
33952856 |
T |
|
| Q |
213 |
tgacatct |
220 |
Q |
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|||||||| |
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| T |
33952857 |
tgacatct |
33952864 |
T |
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