View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18753_high_4 (Length: 508)
Name: NF18753_high_4
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18753_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 69 - 309
Target Start/End: Original strand, 47457569 - 47457821
Alignment:
| Q |
69 |
ctaatagaacaatacacctattaacttcacaaaacacatgacaaatcgaagttctccaactaactaagaagaaagtgaagaagagaaacaactacttgaa |
168 |
Q |
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| T |
47457569 |
ctaatagaacaacacacctattaacttcacgaaacacatgataaatcgaagttctccaaccaactaagaagaaagtgaagaagagaaacaactatttgaa |
47457668 |
T |
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| Q |
169 |
aaatagattaaacaaa------------tttaattacaagacgtagagcccataattctttccaaatagttaaacaagctctgaccgacagtataatctt |
256 |
Q |
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| T |
47457669 |
aaatagattgaacaaattgttaagcaaatttaattacaagacgtagagcctataattctttctaaatagttaaacaagctctgaccgatggtataatctt |
47457768 |
T |
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| Q |
257 |
ctaataattttcctagaatctctaataatcaaaggtcaacaagtagcaatagc |
309 |
Q |
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| T |
47457769 |
ctaataattttcctagagtctctaataatcaaaggtcaataagtagcaatagc |
47457821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 411 - 491
Target Start/End: Original strand, 47457915 - 47457993
Alignment:
| Q |
411 |
ctctaatcaaacttaaacaattatcaaacacttaattggatatttttatttcgtttgactctattatattcaatcaaaatc |
491 |
Q |
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| T |
47457915 |
ctctaatcaaacttaaacaattatcaaacacttaattggatatttttatttcgtttga--ctattatattcaatcaaaatc |
47457993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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