View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18753_high_5 (Length: 465)
Name: NF18753_high_5
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18753_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 15 - 448
Target Start/End: Complemental strand, 18103027 - 18102594
Alignment:
| Q |
15 |
aatataattagataccaaaaattcaaacacttaaatatagaaggaatcgaagaaaacataccatcaacaaatgttcaatctcatctttatccatctcaat |
114 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18103027 |
aatataattagataccaaatattcaaacacttaaatatagaaagaatcaaagaaaacataccatcaacaaatgttcaatctcatctttatccatctcaat |
18102928 |
T |
|
| Q |
115 |
cttcccatcatccaaagaaatgttaagtaaagcatcaagcacatcaccattcccaatagaaccagtaccttccctcatcttcaacctttccccaacaaat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18102927 |
cttcccatcatccaaagaaatgttaagtaaagcatcaagcacatcaccattcccaatagaaccagtaccttccctcatcttcaacctttccccaacaaat |
18102828 |
T |
|
| Q |
215 |
ctcctaaaaatactcaaaaccttcttaacagaaataacagaacgccttctaataccttgcaaatcaaaaatcttcaacataggnnnnnnntctgacaaat |
314 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
18102827 |
ctcctaaatatactcaaaaccttcttaacagaaataacagaacgccttctaataccttgcaaatcaaaaatcttcagcataggaaaaaaatctgacaaat |
18102728 |
T |
|
| Q |
315 |
tcggtgctccaacttccttcaatatactcacaacaatctccttatactctccagcttcctcgacagaatgcacaaaatctgccgagaaaaaagtatttga |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18102727 |
tcggtgctccaacttccttcaatatactcacaacaatctccttatactctccagcttcctcgacagaatgcacaaaatctgccgagaaaaaagtatttga |
18102628 |
T |
|
| Q |
415 |
caacaaattagtcgtcgtcatgaaagcaactctt |
448 |
Q |
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| T |
18102627 |
caacaaattagtcgtcgtcatgaaagcaactctt |
18102594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 15 - 448
Target Start/End: Complemental strand, 18092881 - 18092450
Alignment:
| Q |
15 |
aatataattagataccaaaaattcaaacacttaaatatagaaggaatcgaagaaaacataccatcaacaaatgttcaatctcatctttatccatctcaat |
114 |
Q |
| |
|
|||| |||||||||| || ||| ||| ||||||||| |||||||||| ||||||||||||| ||| || ||||||||||||||||||||||||||||| |
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| T |
18092881 |
aatagaattagatac--aagattaaaaaacttaaatagagaaggaatcagagaaaacataccagcaataagtgttcaatctcatctttatccatctcaat |
18092784 |
T |
|
| Q |
115 |
cttcccatcatccaaagaaatgttaagtaaagcatcaagcacatcaccattcccaatagaaccagtaccttccctcatcttcaacctttccccaacaaat |
214 |
Q |
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||||||||||||||||||||| || || |||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18092783 |
cttcccatcatccaaagaaatattgagcaaagcatctagaacatcatcattcccaatagaaccagtaccttccctcatcttcaacctttccccaacaaaa |
18092684 |
T |
|
| Q |
215 |
ctcctaaaaatactcaaaaccttcttaacagaaataacagaacgccttctaataccttgcaaatcaaaaatcttcaacataggnnnnnnntctgacaaat |
314 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||| |
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| T |
18092683 |
ctcctaaatatactcaaaaccttcttaacagaaacaacagaacgccttctaataccttgcaaatcaaaaaccttcaacataggaaaaaaatccgacaaat |
18092584 |
T |
|
| Q |
315 |
tcggtgctccaacttccttcaatatactcacaacaatctccttatactctccagcttcctcgacagaatgcacaaaatctgccgagaaaaaagtatttga |
414 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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|
| T |
18092583 |
tcggtgctccaacttccttcaatatactcacaacaatctccttatactctccagcttcctcagcagaatgcacaaaatctgccgagaaaaaagtattcga |
18092484 |
T |
|
| Q |
415 |
caacaaattagtcgtcgtcatgaaagcaactctt |
448 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |
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|
| T |
18092483 |
caacaaattaatcgtcgtcatgaaagcaactctt |
18092450 |
T |
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