View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18753_high_6 (Length: 452)
Name: NF18753_high_6
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18753_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 72 - 435
Target Start/End: Original strand, 40545229 - 40545595
Alignment:
| Q |
72 |
aaaatgatctaaatatattttgttttattcttaaaagaattagatttgtgtataagaacgaaattaaacaccaaactttaaagaaagagtaagaatagaa |
171 |
Q |
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| T |
40545229 |
aaaatgatctaaatatattttgttttattcttaaaagaattagatttttgtataagaacgaaattaaacaccaaactttaaagaaagagtaagaatagaa |
40545328 |
T |
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| Q |
172 |
ttaatcaacnnnnnnn-tagagttaaagattcataaagtaagtgggnnnnnnntaattacaatgnnnnnnn--cagtcgttcattttcggttctctcctt |
268 |
Q |
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| T |
40545329 |
ttaatcaacaaaaaaaatagagttaaagattcataaagtaagtgggaaaaaaataattacaatgtgtttttttcactcgttcattttcggttctctcctt |
40545428 |
T |
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| Q |
269 |
cttcctctttgatcctaaattctcaatttatagtcacacactcagactcctcagtcctctccatgcagcaagccattgtgacaaactgacaatgagataa |
368 |
Q |
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| T |
40545429 |
cttcctctttgatcctaaattctcaatttatagtcacacactcagactcctcagtcctctccatgcagcaagccattgtgacaaactgaaaatgagataa |
40545528 |
T |
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| Q |
369 |
aaatgagcattggattcttgtttgttgtttgtaagatgacaaagaaggaatggtcagacttagtttt |
435 |
Q |
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| T |
40545529 |
aaatgagcattgaattcttgtttgttgtttgtaagatgacaaagaaggaatggtcagacttagtttt |
40545595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 40545123 - 40545169
Alignment:
| Q |
29 |
cattataacgttgtcacatcattaatgaataaactacatcagtaaaa |
75 |
Q |
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| T |
40545123 |
cattataacgttgtcacatcattaatgaataaactacatcagtaaaa |
40545169 |
T |
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