View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18753_high_9 (Length: 407)
Name: NF18753_high_9
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18753_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 390
Target Start/End: Original strand, 2124220 - 2124591
Alignment:
| Q |
17 |
aatattttcccacattactagtctaagaggcttctccaataaaaaccgtccttattaaaattgatttgatcatcttttcacccttagtggcttaatcatt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2124220 |
aatattttcccacattactagtctaagaggcttctccaataaaaaccgtccttattaaaattgatttgatcatcttttcatccttagtggcttaatcatt |
2124319 |
T |
|
| Q |
117 |
ttataagtttggatactgtttctttagtggcttaatcattttatatatttggataccgtttcttagttgtaacattcatgttgtatttggacttgttaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2124320 |
ttataagtttggatactgtttctttagtggcttaatcattttatatatttggataccgtttcttagttgtaacattcatgttgtatttggacttgttaaa |
2124419 |
T |
|
| Q |
217 |
gaaaactttcttatatgaaaaaggtatagaagtacatcgtactattaaaatctgtagcgtactaatatttataccaatctatataaacacacccttgttt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2124420 |
gaaaactttcttatatgaaaaaggtatagaagtacatcgtactatt--gatctgtagcgtactaatatttataccaatctatataaacacacccttgttt |
2124517 |
T |
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| Q |
317 |
tgttttatctcaatctaattttatctacccctaagtacgtatatatacgaacaatggtacgtacgtgtcttaat |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2124518 |
tgttttatctcaatctaattttatctacccctaagtacgtatatatacgaacaatggtacgtacgtgtcttaat |
2124591 |
T |
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