View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18753_low_10 (Length: 397)
Name: NF18753_low_10
Description: NF18753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18753_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 184 - 387
Target Start/End: Complemental strand, 44881210 - 44881009
Alignment:
| Q |
184 |
cttttcgaaaaacaaagaactaaagtgtaagagtttctaatcttnnnnnnnnnnnnnnnttatcgtagtaaacaaatggaaattaacttcaactttcctc |
283 |
Q |
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| T |
44881210 |
cttttcgaaaaacaaagaactaaagtgtaagagtttctaatcttaaaaaaaaaaaaa--ttatcgtagtaaacaaatggaaattaacttcaactttcctc |
44881113 |
T |
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| Q |
284 |
aaaatctctatnnnnnnnntaaaatcatatatatataatgcaccgtatatctttttaatggtattttaacgcatttctgaaactttcttagctcattgcc |
383 |
Q |
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|||| |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44881112 |
aaaaactctataaaaaaaataaaatcatatgtatataatgcaccctatatctttttaatggtattttaacgcatttctgaaactttcttagctcattgcc |
44881013 |
T |
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| Q |
384 |
tttg |
387 |
Q |
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|||| |
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| T |
44881012 |
tttg |
44881009 |
T |
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